renin: Example Dataset for 'haplo.ccs'

In haplo.ccs: Estimate Haplotype Relative Risks in Case-Control Data

Example Dataset for 'haplo.ccs'

Description

This dataset serves as the example dataset for 'haplo.ccs'. The genotypes in this dataset were generated from haplotype frequency data for renin, one of the genes in the renin-angiotensin system.

Usage

data(renin)

Format

All variables are in numeric format.

Details

'case': case-control status (1=Case, 0=Control)

'geno': a matrix of alleles indicating genotype where each locus has a pair of adjacent columns of alleles, and the order of columns corresponds to the order of the loci on the chromosome (1=A, 2=C, 3=T, 4=G)

'gender': gender (1=Male, 2=Female)

'age': age in years

'race': race (1=White, 2=Black, 3=Asian, 4=Other)

Note

Other covariates, such as gender, age, and race were randomly generated. Therefore no scientific inference should be made from these data.

Author(s)

Benjamin French and Thomas Lumley, University of Washington

References

French B, Lumley T, Monks SA, Rice KM, Hindorff LA, Reiner AP, Psaty BM. Simple estimates of haplotype relative risks in case-control data. Genetic Epidemiology 2006; 30(6):485-494.

See Also

haplo.ccs

Examples

data(renin)

haplo.ccs documentation built on April 28, 2022, 9:05 a.m.