heatmaply: Interactive Cluster Heat Maps Using 'plotly'
Version 0.10.1

Create interactive cluster 'heatmaps' that can be saved as a stand- alone HTML file, embedded in 'R Markdown' documents or in a 'Shiny' app, and available in the 'RStudio' viewer pane. Hover the mouse pointer over a cell to show details or drag a rectangle to zoom. A 'heatmap' is a popular graphical method for visualizing high-dimensional data, in which a table of numbers are encoded as a grid of colored cells. The rows and columns of the matrix are ordered to highlight patterns and are often accompanied by 'dendrograms'. 'Heatmaps' are used in many fields for visualizing observations, correlations, missing values patterns, and more. Interactive 'heatmaps' allow the inspection of specific value by hovering the mouse over a cell, as well as zooming into a region of the 'heatmap' by dragging a rectangle around the relevant area. This work is based on the 'ggplot2' and 'plotly.js' engine. It produces similar 'heatmaps' as 'heatmap.2' or 'd3heatmap', with the advantage of speed ('plotly.js' is able to handle larger size matrix), the ability to zoom from the 'dendrogram' panes, and the placing of factor variables in the sides of the 'heatmap'.

Browse man pages Browse package API and functions Browse package files

AuthorTal Galili [aut, cre, cph] (https://www.r-statistics.com), Jonathan Sidi [ctb] (https://github.com/yonicd), Alan O'Callaghan [ctb] (https://github.com/Alanocallaghan), Yoav Benjamini [ths]
Date of publication2017-05-27 16:07:15 UTC
MaintainerTal Galili <tal.galili@gmail.com>
LicenseGPL-2 | GPL-3
Version0.10.1
URL https://cran.r-project.org/package=heatmaply https://github.com/talgalili/heatmaply/ https://www.r-statistics.com/tag/heatmaply/
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("heatmaply")

Man pages

col2plotlyrgb: Color to RGB Text
heatmaply: Cluster heatmap based on plotly
heatmapr: Creates a heatmapr object
is.heatmapr: Is the object of class heatmapr
is.na10: Indicates which elements are missing (either 1 and 0)
is.plotly: Checks if an object is of class plotly or not.
normalize: Normalization transformation (0-1)
percentize: Empirical Percentile Transformation
RColorBrewer_colors: RColorBrewer color Ramp Palette
side_color_plot: Side color plots for heatmaps

Functions

Blues Man page
BrBG Man page
BuGn Man page
BuPu Man page
GnBu Man page
GpdivergingColormap Source code
Greens Man page
Greys Man page
OrRd Man page
Oranges Man page
PRGn Man page
PiYG Man page
PuBu Man page
PuBuGn Man page
PuOr Man page
PuRd Man page
Purples Man page
RColorBrewer_colors Man page
RdBu Man page
RdGy Man page
RdPu Man page
RdYlBu Man page
RdYlGn Man page
Reds Man page
Spectral Man page
YlGn Man page
YlGnBu Man page
YlOrBr Man page
YlOrRd Man page
calc_margin Source code
col2plotlyrgb Man page Source code
cool_warm Man page Source code
ggplot_heatmap Source code
heatmap_subplot_from_ggplotly Source code
heatmaply Man page Source code
heatmaply.default Man page Source code
heatmaply.heatmapr Man page Source code
heatmaplyWelcomeMessage Source code
heatmaply_cor Man page Source code
heatmaply_na Man page Source code
heatmapr Man page Source code
is.heatmapr Man page Source code
is.na10 Man page Source code
is.plotly Man page Source code
k_colors Source code
make_colorscale Source code
normalize Man page Source code
normalize.data.frame Man page Source code
normalize.default Man page Source code
normalize.matrix Man page Source code
onAttach Source code
parse_plotly_color Source code
percentize Man page Source code
percentize.data.frame Man page Source code
percentize.default Man page Source code
percentize.matrix Man page Source code
percentize_predict Source code
plotly_dend Source code
plotly_heatmap Source code
predict_colors Source code
side_color_plot Man page Source code

Files

inst
inst/doc
inst/doc/heatmaply.Rmd
inst/doc/heatmaply.R
inst/doc/heatmaply.html
tests
tests/testthat.R
tests/testthat
tests/testthat/test_misc.R
tests/testthat/test_heatmaply.R
tests/testthat/test_heatmapr.R
NAMESPACE
NEWS
NEWS.md
R
R/percentize.R
R/heatmaply.R
R/is.na10.R
R/RColorBrewer.R
R/plots.R
R/heatmapr.R
R/zzz.R
vignettes
vignettes/heatmaply.Rmd
vignettes/heatmaply.md
README.md
MD5
build
build/vignette.rds
DESCRIPTION
ChangeLog
man
man/heatmapr.Rd
man/is.na10.Rd
man/is.plotly.Rd
man/RColorBrewer_colors.Rd
man/side_color_plot.Rd
man/percentize.Rd
man/heatmaply.Rd
man/is.heatmapr.Rd
man/normalize.Rd
man/col2plotlyrgb.Rd
heatmaply documentation built on May 27, 2017, 5:02 p.m.