Oslo: Oslo Transect Subset Data

In heplots: Visualizing Hypothesis Tests in Multivariate Linear Models

Oslo Transect Subset Data

Description

The Oslo data set contains chemical concentrations of 332 samples of different plant species collected along a 120 km transect running through the city of Oslo, Norway. It is a subset of the OsloTransect data provided by the rrcov package.

Format

A data frame with 332 observations on the following 14 variables.

site

transect site ID, a factor with levels 102 103 104 105 106 107 108 109 111 112 113 114 115 116 117 118 119 121 122 123 124 125 126 127 128 129 131 132 133 134 135 136 138 139 141 142 143 144

XC

X coordinate, a numeric vector

YC

Y coordinate, a numeric vector

forest

forest type, a factor with levels birspr mixdec pine sprbir sprpin spruce

weather

weather type, a factor with levels cloud moist nice rain

litho

lithological type, a factor with levels camsed (Cambro-Silurian sedimentary), gneis_o (Precambrian gneisses - Oslo), gneis_r (- Randsfjord), magm (Magmatic rocks)

altitude

altitude, a numeric vector

Cu

Copper, a numeric vector

Fe

Iron, a numeric vector

K

Potassium, a numeric vector

Mg

Magnesium, a numeric vector

Mn

Manganese, a numeric vector

P

Lead, a numeric vector

Zn

Zinc, a numeric vector

Details

The OsloTransect contains 360 observations, with 9 observations per site. Only 7 chemical elements were retained from the 25 contained in the OsloTransect data, and these were all log-transformed, following Todorov and Filzmoser (2009).

Only complete cases on these variables were retained, and two lithological types of low frequency were removed, leaving 332 observations.

Source

Reimann, C., Arnoldussen, A., Boyd, R., Finne, T.E., Koller, F., Nordgulen, Oe., And Englmaier, P. (2007) Element contents in leaves of four plant species (birch, mountain ash, fern and spruce) along anthropogenic and geogenic concentration gradients, The Science of the Total Environment, 377, 416-433.

References

Todorov V. and Filzmoser P. (2009) Robust statistic for the one-way MANOVA, submitted to the Journal of Environmetrics.

Examples

data(Oslo)
table(Oslo$litho)

Oslo.mod <- lm(cbind(Cu, K, Mg, Mn, P, Zn) ~ litho, data=Oslo)
car::Anova(Oslo.mod)

heplot(Oslo.mod, var=c("Cu", "Mn"))
pairs(Oslo.mod)

## Not run: 
if(require(candisc)) {
  Oslo.can <- candisc(Oslo.mod)
  Oslo.can
  heplot(Oslo.can)
  if(requireNamespace("rgl")){
    heplot3d(Oslo.can, shade=TRUE, wire=FALSE, alpha=0.5, var.col="red")
  }
}

## End(Not run)

heplots documentation built on May 29, 2024, 9:24 a.m.