plotC: Generate an Image of a Contact Matrix

In hhh4contacts: Age-Structured Spatio-Temporal Models for Infectious Disease Counts

Generate an Image of a Contact Matrix

Description

Generate an Image of a Contact Matrix

Usage

plotC(
  C,
  grouping = NULL,
  xlab = "age group of contact",
  ylab = "age group of participant",
  at = 15,
  col.regions = rev(heat.colors(length(at) - 1)),
  ...,
  contour = FALSE
)

Arguments

C	a square numeric matrix.
grouping	numeric vector of sizes of aggregated groups, e.g., grouping = c(1,3), to draw separation lines after the first and the forth subgroup. This is ignored if contour = TRUE.
xlab, ylab	axis labels.
at	numeric vector of break points of the color levels, or a single integer specifying the number of cuts (which defaults to 15 as in levelplot).
col.regions	vector of color levels.
...	further arguments passed to levelplot or filled.contour (if contour = TRUE).
contour	logical indicating if a filled.contour should be drawn instead of a levelplot (the default).

Examples

## contour plot
plotC(contactmatrix_POLYMOD, contour = TRUE)

## level plots illustrating aggregation of age groups
if (require("gridExtra")) {
    grid.arrange(plotC(contactmatrix_POLYMOD, grouping = c(1,2,2,4,4,2)),
                 plotC(contactmatrix(grouping = c(1,2,2,4,4,2))),
                 nrow = 1)
}

hhh4contacts documentation built on Oct. 8, 2024, 1:08 a.m.