R/data.R

In hicream: HI-C diffeREntial Analysis Method

## Documentation for datasets

#' @title Dataset "pighic"
#' @name pighic
#' 
#' @description 6 Hi-C matrices (3 in each condition) obtained from two 
#' different developmental stages of pig embryos (90 and 110 days of gestation) 
#' corresponding to chromosome 1. 
#' 
#' @docType data
#' 
#' @format An object with two entries: \describe{
#' \item{data}{an object of class 
#' \code{\link[InteractionSet:interactions]{InteractionSet}} 
#' containing 6 Hi-C matrices from 2 conditions (3 each) for 21 interactions.}
#' \item{conditions}{a two-level factor indicating the condition of each matrix 
#' in \code{data}.}}
#' 
#' @details The data are identical to the dataset present in the package 
#' \code{treediff}.
#'  
#' @references Nathalie Vialaneix, Gwendaelle Cardenas, Marie Chavent, 
#' Sylvain Foissac, Pierre Neuvial, and Nathanael Randriamihamison (2023).
#' treediff: Testing Differences Between Families of Trees.
#' \url{https://cran.r-project.org/package=treediff}
#'  
#' @examples
#' data(pighic)
#'
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