hmm.discnp: Hidden Markov Models with Discrete Non-Parametric Observation Distributions

Fits hidden Markov models with discrete non-parametric observation distributions to data sets. Simulates data from such models. Finds most probable underlying hidden states, the most probable sequences of such states, and the log likelihood of a collection of observations given the parameters of the model.

Author
Rolf Turner
Date of publication
2016-04-08 11:33:08
Maintainer
Rolf Turner <r.turner@auckland.ac.nz>
License
GPL (>= 2)
Version
0.2-4

View on CRAN

Man pages

colifCount
Coliform counts in sea-water samples
fitted.hmm.discnp
Fitted values of a discrete non-parametric hidden Markov...
hmm
Fit a hidden Markov model to discrete data.
hmm.discnp-internal
Internal hmm.discnp functions.
lesionCount
Multiple sclerosis lesion counts for three patients.
logLikHmm
Log likelihood of a hidden Markov model
mps
Most probable states.
pr
Probability of state sequences.
sim.hmm
Simulate discrete data from a hidden Markov model.
sp
Calculate the conditional state probabilities.
viterbi
Most probable state sequence.

Files in this package

hmm.discnp
hmm.discnp/inst
hmm.discnp/inst/Ratfor
hmm.discnp/inst/Ratfor/gfun.r
hmm.discnp/inst/Ratfor/recurse.r
hmm.discnp/inst/Ratfor/makefor
hmm.discnp/inst/Ratfor/bfun.r
hmm.discnp/inst/Ratfor/RCS
hmm.discnp/inst/Ratfor/RCS/gfun.r,v
hmm.discnp/inst/Ratfor/RCS/makefor,v
hmm.discnp/inst/Ratfor/RCS/recurse.r,v
hmm.discnp/inst/Ratfor/RCS/afun.r,v
hmm.discnp/inst/Ratfor/RCS/xfun.r,v
hmm.discnp/inst/Ratfor/RCS/bfun.r,v
hmm.discnp/inst/Ratfor/xfun.r
hmm.discnp/inst/Ratfor/afun.r
hmm.discnp/inst/READ_ME
hmm.discnp/src
hmm.discnp/src/afun.f
hmm.discnp/src/xfun.f
hmm.discnp/src/recurse.f
hmm.discnp/src/bfun.f
hmm.discnp/src/gfun.f
hmm.discnp/NAMESPACE
hmm.discnp/data
hmm.discnp/data/lesionCount.rda
hmm.discnp/data/colifCount.rda
hmm.discnp/R
hmm.discnp/R/ffun.R
hmm.discnp/R/sp.R
hmm.discnp/R/fitted.hmm.discnp.R
hmm.discnp/R/recurse.R
hmm.discnp/R/hmm.R
hmm.discnp/R/charList.R
hmm.discnp/R/revise.tpm.R
hmm.discnp/R/pr.R
hmm.discnp/R/mps.R
hmm.discnp/R/First.R
hmm.discnp/R/revise.rho.R
hmm.discnp/R/init.all.R
hmm.discnp/R/viterbi.R
hmm.discnp/R/RCS
hmm.discnp/R/RCS/mat2list.R,v
hmm.discnp/R/RCS/tidyup.R,v
hmm.discnp/R/RCS/logLikHmm.R,v
hmm.discnp/R/RCS/recurse.R,v
hmm.discnp/R/RCS/mps.R,v
hmm.discnp/R/RCS/First.R,v
hmm.discnp/R/RCS/check.yval.R,v
hmm.discnp/R/RCS/revise.tpm.R,v
hmm.discnp/R/RCS/sp.R,v
hmm.discnp/R/RCS/revise.rho.R,v
hmm.discnp/R/RCS/viterbi.R,v
hmm.discnp/R/RCS/pr.R,v
hmm.discnp/R/RCS/hmm.R,v
hmm.discnp/R/RCS/revise.ispd.R,v
hmm.discnp/R/RCS/sim.hmm.R,v
hmm.discnp/R/RCS/ffun.R,v
hmm.discnp/R/RCS/init.all.R,v
hmm.discnp/R/RCS/fitted.hmm.discnp.R,v
hmm.discnp/R/check.yval.R
hmm.discnp/R/sim.hmm.R
hmm.discnp/R/logLikHmm.R
hmm.discnp/R/revise.ispd.R
hmm.discnp/MD5
hmm.discnp/DESCRIPTION
hmm.discnp/ChangeLog
hmm.discnp/man
hmm.discnp/man/hmm.discnp-internal.Rd
hmm.discnp/man/logLikHmm.Rd
hmm.discnp/man/sim.hmm.Rd
hmm.discnp/man/lesionCount.Rd
hmm.discnp/man/hmm.Rd
hmm.discnp/man/mps.Rd
hmm.discnp/man/viterbi.Rd
hmm.discnp/man/fitted.hmm.discnp.Rd
hmm.discnp/man/pr.Rd
hmm.discnp/man/sp.Rd
hmm.discnp/man/colifCount.Rd