hmm.discnp: Hidden Markov Models with Discrete Non-Parametric Observation Distributions

Fits hidden Markov models with discrete non-parametric observation distributions to data sets. Simulates data from such models. Finds most probable underlying hidden states, the most probable sequences of such states, and the log likelihood of a collection of observations given the parameters of the model.

AuthorRolf Turner
Date of publication2016-04-08 11:33:08
MaintainerRolf Turner <r.turner@auckland.ac.nz>
LicenseGPL (>= 2)
Version0.2-4

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Files in this package

hmm.discnp
hmm.discnp/inst
hmm.discnp/inst/Ratfor
hmm.discnp/inst/Ratfor/gfun.r
hmm.discnp/inst/Ratfor/recurse.r
hmm.discnp/inst/Ratfor/makefor
hmm.discnp/inst/Ratfor/bfun.r
hmm.discnp/inst/Ratfor/RCS
hmm.discnp/inst/Ratfor/RCS/gfun.r,v
hmm.discnp/inst/Ratfor/RCS/makefor,v
hmm.discnp/inst/Ratfor/RCS/recurse.r,v
hmm.discnp/inst/Ratfor/RCS/afun.r,v
hmm.discnp/inst/Ratfor/RCS/xfun.r,v
hmm.discnp/inst/Ratfor/RCS/bfun.r,v
hmm.discnp/inst/Ratfor/xfun.r
hmm.discnp/inst/Ratfor/afun.r
hmm.discnp/inst/READ_ME
hmm.discnp/src
hmm.discnp/src/afun.f
hmm.discnp/src/xfun.f
hmm.discnp/src/recurse.f
hmm.discnp/src/bfun.f
hmm.discnp/src/gfun.f
hmm.discnp/NAMESPACE
hmm.discnp/data
hmm.discnp/data/lesionCount.rda
hmm.discnp/data/colifCount.rda
hmm.discnp/R
hmm.discnp/R/ffun.R hmm.discnp/R/sp.R hmm.discnp/R/fitted.hmm.discnp.R hmm.discnp/R/recurse.R hmm.discnp/R/hmm.R hmm.discnp/R/charList.R hmm.discnp/R/revise.tpm.R hmm.discnp/R/pr.R hmm.discnp/R/mps.R hmm.discnp/R/First.R hmm.discnp/R/revise.rho.R hmm.discnp/R/init.all.R hmm.discnp/R/viterbi.R
hmm.discnp/R/RCS
hmm.discnp/R/RCS/mat2list.R,v
hmm.discnp/R/RCS/tidyup.R,v
hmm.discnp/R/RCS/logLikHmm.R,v
hmm.discnp/R/RCS/recurse.R,v
hmm.discnp/R/RCS/mps.R,v
hmm.discnp/R/RCS/First.R,v
hmm.discnp/R/RCS/check.yval.R,v
hmm.discnp/R/RCS/revise.tpm.R,v
hmm.discnp/R/RCS/sp.R,v
hmm.discnp/R/RCS/revise.rho.R,v
hmm.discnp/R/RCS/viterbi.R,v
hmm.discnp/R/RCS/pr.R,v
hmm.discnp/R/RCS/hmm.R,v
hmm.discnp/R/RCS/revise.ispd.R,v
hmm.discnp/R/RCS/sim.hmm.R,v
hmm.discnp/R/RCS/ffun.R,v
hmm.discnp/R/RCS/init.all.R,v
hmm.discnp/R/RCS/fitted.hmm.discnp.R,v
hmm.discnp/R/check.yval.R hmm.discnp/R/sim.hmm.R hmm.discnp/R/logLikHmm.R hmm.discnp/R/revise.ispd.R
hmm.discnp/MD5
hmm.discnp/DESCRIPTION
hmm.discnp/ChangeLog
hmm.discnp/man
hmm.discnp/man/hmm.discnp-internal.Rd hmm.discnp/man/logLikHmm.Rd hmm.discnp/man/sim.hmm.Rd hmm.discnp/man/lesionCount.Rd hmm.discnp/man/hmm.Rd hmm.discnp/man/mps.Rd hmm.discnp/man/viterbi.Rd hmm.discnp/man/fitted.hmm.discnp.Rd hmm.discnp/man/pr.Rd hmm.discnp/man/sp.Rd hmm.discnp/man/colifCount.Rd

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