hoa: Higher Order Likelihood Inference

Performs likelihood-based inference for a wide range of regression models. Provides higher-order approximations for inference based on extensions of saddlepoint type arguments as discussed in the book Applied Asymptotics: Case Studies in Small-Sample Statistics by Brazzale, Davison, and Reid (2007).

Author
R port by Alessandra R. Brazzale <alessandra.brazzale@unipd.it>, following earlier work by Douglas Bates. The function tem is based on work by Anthony Davison <Anthony.Davison@epfl.ch>
Date of publication
2015-08-12 00:35:40
Maintainer
Alex-Antoine Fortin <alex@fortin.bio>
License
GPL (>= 2) | file LICENCE
Version
2.1.4
URLs

View on CRAN

Man pages

aids
AIDS Symptoms and AZT Use Data
airway
Airway Data
all.profiles.nlreg
Support for function 'profile.nlreg'
anova.rsm
ANOVA Table for a RSM Object
anova.rsmlist
Use anova() on a "rsmlist" object
babies
Crying Babies Data
C1
Six Herbicide Data Sets
chlorsulfuron
Chlorsulfuron Data
coef.nlreg
Use coef() on a 'nlreg' object
cond
Approximate Conditional Inference - Generic Function
cond.glm
Approximate Conditional Inference for Logistic and Loglinear...
cond.object
Approximate Conditional Inference Object
cond.rsm
Approximate Conditional Inference in Regression-Scale Models
contour.all.nlreg.profiles
Contour Method for 'nlreg' Objects
daphnia
'Daphnia Magna' Data
darwin
Darwin's Data on Growth Rates of Plants
Dmean
Differentiate the Mean Function of a Nonlinear Model
dormicum
Dormicum Data
Dvar
Differentiate the Variance Function of a Nonlinear Model
expInfo
Returns the Expected Information Matrix - Generic Function
expInfo.nlreg
Expected Information Matrix for 'nlreg' Objects
family.cond
Use family() on a "cond" object
family.rsm
Use family() on a "rsm" object
family.rsm.object
Family Object for Regression-Scale Models
family.summary.cond
Use family() on a "summary.cond" object
fitted.nlreg
Use fitted() on a 'nlreg' object
fraudulent
Fraudulent Automobile Insurance Claims Data
fungal
Fungal Infections Treatment Data
helicopter
Helicopter Data
hoa
Higher Order Likelihood Inference
houses
House Price Data
Huber
Huber's Least Favourable Distribution
logLik.nlreg
Compute the Log Likelihood for Nonlinear Heteroscedastic...
logLik.rsm
Compute the Log Likelihood for Regression-Scale Models
make.family.rsm
Support for RSM Family Functions
marg.object
Approximate Marginal Inference Object
metsulfuron
Metsulfuron Methyl Data
mpl
Maximum Adjusted Profile Likelihood Estimation - Generic...
mpl.nlreg
Maximum Adjusted Profile Likelihood Estimates for a 'nlreg'...
mpl.object
Maximum Adjusted Profile Likelihood Object
nlreg
Fit a Nonlinear Heteroscedastic Model via Maximum Likelihood
nlreg.contours.object
Contour Object for Nonlinear Heteroscedastic Models
nlreg.diag
Nonlinear Heteroscedastic Model Diagnostics
nlreg.object
Nonlinear Heteroscedastic Model Object
nlreg.profile.objects
Profile Objects for Nonlinear Heteroscedastic Models
nuclear
Nuclear Power Station Data
obsInfo
Returns the Observed Information Matrix - Generic Function
obsInfo.nlreg
Observed Information Matrix for 'nlreg' Objects
param
Extract All Parameters from a Model - Generic Function
param.nlreg
Use param() on a 'nlreg' object
plot.cond
Generate Plots for an Approximate Conditional Inference...
plot.fr
Plot a fr Object
plot.marg
Generate Plots for an Approximate Marginal Inference Object
plot.nlreg.contours
Use plot() on a 'nlreg.contours' object
plot.nlreg.diag
Diagnostic Plots for Nonlinear Heteroscedastic Models
plot.nlreg.profiles
Use plot() on a 'profile.nlreg' and 'all.profiles.nlreg'...
print.cond
Use print() on a "cond" object
print.family.rsm
Use print() on a "family.rsm" object
print.marg
Use print() on a "marg" object
print.mpl
Use print() on a 'mpl' object
print.nlreg
Use print() on a 'nlreg' object
print.nlreg.contours
Use print() on a 'nlreg.contours' object
print.nlreg.profiles
Use print() on a 'nlreg.profile' and 'all.nlreg.profiles'...
print.rsm
Use print() on a "rsm" object
print.summary.cond
Use print() on a "summary.cond" object
print.summary.marg
Use print() on a "summary.marg" object
print.summary.mpl
Use print() on a 'summary.mpl' object
print.summary.nlreg
Use print() on a 'summary.nlreg' object
print.summary.nlreg.profiles
Use print() on a 'summary.nlreg.profile' and...
print.summary.rsm
Use print() on a "summary.rsm" object
profile.nlreg
Profile Method for 'nlreg' Objects
qStheta
Support for 'nlreg' package of 'hoa' bundle
rabbits
Rabbits Data
residuals.nlreg
Use residuals() on a 'nlreg' object
residuals.rsm
Compute Residuals for Regression-Scale Models
ria
Radioimmunoassay Data
rsm
Fit a Regression-Scale Model
rsm.diag
Diagnostics for Regression-Scale Models
rsm.diag.plots
Diagnostic Plots for Regression-Scale Models
rsm.dispersion
Support for Functions rsm.fit and rsm.surv
rsm.distributions
RSM Family Support Object
rsm.families
Generate a RSM Family Object
rsm.fit
Fit a Regression-Scale Model Without Computing the Model...
rsm.null
Fit an Empty Regression-Scale Model
rsm.object
Regression-Scale Model Object
rsm.surv
Fit a Regression-Scale Model Without Computing the Model...
summary.all.nlreg.profiles
Summary Method for Objects of Class 'all.nlreg.profiles'
summary.cond
Summary Method for Objects of Class "cond"
summary.fr
Likelihood-Based Confidence Intervals Based on fr Object
summary.marg
Summary Method for Objects of Class "marg"
summary.mpl
Summary Method for 'mpl' Objects
summary.nlreg
Summary Method for Nonlinear Heteroscedastic Models
summary.nlreg.profile
Summary Method for Objects of Class 'nlreg.profile'
summary.rsm
Summary Method for Regression-Scale Models
tem
Tangent exponential model: Higher Order Likelihood...
update.rsm
Update and Re-fit a RSM Model Call
urine
Urine Data
var2cor
Convert Covariance Matrix to Correlation Matrix - Generic...
var2cor.nlregmpl
Use var2cor() on a 'nlreg' and 'mpl' object
vcov.rsm
Calculate Variance-Covariance Matrix for a Fitted RSM Model
venice
Sea Level Data

Files in this package

hoa
hoa/COPYING
hoa/inst
hoa/inst/CITATION
hoa/inst/margdemo.R
hoa/inst/doc
hoa/inst/doc/Rnews-paper.Rnw
hoa/inst/doc/Rnews-paper.R
hoa/inst/doc/Rnews-paper.pdf
hoa/NAMESPACE
hoa/data
hoa/data/fraudulent.rda
hoa/data/nuclear.rda
hoa/data/C4.rda
hoa/data/C3.rda
hoa/data/helicopter.rda
hoa/data/dormicum.rda
hoa/data/babies.rda
hoa/data/houses.rda
hoa/data/M2.rda
hoa/data/C1.rda
hoa/data/daphnia.rda
hoa/data/C2.rda
hoa/data/venice.rda
hoa/data/ria.rda
hoa/data/chlorsulfuron.rda
hoa/data/airway.rda
hoa/data/darwin.rda
hoa/data/aids.rda
hoa/data/urine.rda
hoa/data/metsulfuron.rda
hoa/data/fungal.rda
hoa/data/rabbits.rda
hoa/data/M4.rda
hoa/R
hoa/R/cond.R
hoa/R/nlreg.R
hoa/R/marg.R
hoa/R/tem.R
hoa/vignettes
hoa/vignettes/Rnews-paper.Rnw
hoa/MD5
hoa/build
hoa/build/vignette.rds
hoa/DESCRIPTION
hoa/LICENCE
hoa/man
hoa/man/print.summary.marg.Rd
hoa/man/expInfo.Rd
hoa/man/summary.marg.Rd
hoa/man/print.family.rsm.Rd
hoa/man/summary.nlreg.Rd
hoa/man/update.rsm.Rd
hoa/man/rsm.diag.plots.Rd
hoa/man/profile.nlreg.Rd
hoa/man/logLik.rsm.Rd
hoa/man/cond.rsm.Rd
hoa/man/var2cor.nlregmpl.Rd
hoa/man/anova.rsmlist.Rd
hoa/man/metsulfuron.Rd
hoa/man/summary.mpl.Rd
hoa/man/print.nlreg.Rd
hoa/man/fitted.nlreg.Rd
hoa/man/anova.rsm.Rd
hoa/man/chlorsulfuron.Rd
hoa/man/print.summary.mpl.Rd
hoa/man/print.nlreg.profiles.Rd
hoa/man/marg.object.Rd
hoa/man/cond.Rd
hoa/man/param.Rd
hoa/man/summary.rsm.Rd
hoa/man/print.summary.nlreg.Rd
hoa/man/cond.object.Rd
hoa/man/family.summary.cond.Rd
hoa/man/fraudulent.Rd
hoa/man/family.cond.Rd
hoa/man/nlreg.object.Rd
hoa/man/logLik.nlreg.Rd
hoa/man/daphnia.Rd
hoa/man/coef.nlreg.Rd
hoa/man/rsm.families.Rd
hoa/man/all.profiles.nlreg.Rd
hoa/man/mpl.Rd
hoa/man/Dmean.Rd
hoa/man/rsm.dispersion.Rd
hoa/man/plot.nlreg.profiles.Rd
hoa/man/cond.glm.Rd
hoa/man/urine.Rd
hoa/man/vcov.rsm.Rd
hoa/man/fungal.Rd
hoa/man/babies.Rd
hoa/man/rsm.null.Rd
hoa/man/nlreg.profile.objects.Rd
hoa/man/aids.Rd
hoa/man/tem.Rd
hoa/man/residuals.nlreg.Rd
hoa/man/rsm.object.Rd
hoa/man/rsm.diag.Rd
hoa/man/param.nlreg.Rd
hoa/man/print.rsm.Rd
hoa/man/nlreg.contours.object.Rd
hoa/man/print.mpl.Rd
hoa/man/summary.cond.Rd
hoa/man/ria.Rd
hoa/man/plot.nlreg.diag.Rd
hoa/man/helicopter.Rd
hoa/man/expInfo.nlreg.Rd
hoa/man/obsInfo.nlreg.Rd
hoa/man/plot.cond.Rd
hoa/man/make.family.rsm.Rd
hoa/man/rsm.Rd
hoa/man/var2cor.Rd
hoa/man/C1.Rd
hoa/man/plot.marg.Rd
hoa/man/Dvar.Rd
hoa/man/mpl.object.Rd
hoa/man/print.cond.Rd
hoa/man/dormicum.Rd
hoa/man/rsm.distributions.Rd
hoa/man/summary.all.nlreg.profiles.Rd
hoa/man/nlreg.Rd
hoa/man/contour.all.nlreg.profiles.Rd
hoa/man/venice.Rd
hoa/man/rabbits.Rd
hoa/man/Huber.Rd
hoa/man/print.summary.nlreg.profiles.Rd
hoa/man/nuclear.Rd
hoa/man/plot.fr.Rd
hoa/man/summary.nlreg.profile.Rd
hoa/man/houses.Rd
hoa/man/rsm.fit.Rd
hoa/man/summary.fr.Rd
hoa/man/plot.nlreg.contours.Rd
hoa/man/hoa.Rd
hoa/man/residuals.rsm.Rd
hoa/man/airway.Rd
hoa/man/mpl.nlreg.Rd
hoa/man/family.rsm.object.Rd
hoa/man/print.marg.Rd
hoa/man/family.rsm.Rd
hoa/man/qStheta.Rd
hoa/man/print.summary.rsm.Rd
hoa/man/nlreg.diag.Rd
hoa/man/print.nlreg.contours.Rd
hoa/man/rsm.surv.Rd
hoa/man/darwin.Rd
hoa/man/obsInfo.Rd
hoa/man/print.summary.cond.Rd
hoa/CHANGES