deletecp: Delete fix point

Description Usage Arguments Details Value Author(s) See Also Examples

View source: R/continuum_clman.R

Description

Delete fix point from continuum line.

Usage

1
deletecp(x, ispec, cpdelete) 

Arguments

x

Object of class Clman.

ispec

ID or index of spectrum to be modified.

cpdelete

Single value or vector of wavelength containing fix point(s) to be deleted.

Details

In some cases, it might be desirable to manually adapt automatically constructed segmended hulls (transformSpeclib). For example local maxima could be removed because they are very small and maybe afflicted with uncertainties which might legitimate it to manipulate the continuum line. Therefore, hsdar provides functions to remove and add "continuum points" from or to a continuum line. Manually adapted continuum lines can then be used to update band depth or ratio transformation. Handle these functions with care to avoid continuum lines too much build by subjective decisions. In the typical workflow, spectra are first transformed (transformSpeclib). Continuum points can then be retrieved (getcp) and manually adapted by adding addcp and deleting (deletecp) of points. Use checkhull to check for errors. If all uncertainties are removed, re-calculate the hull (makehull) and update the transformed spectrum (updatecl).

Value

Object of class Clman containing the updated version of x.

Author(s)

Lukas Lehnert and Hanna Meyer

See Also

transformSpeclib, addcp, getcp, checkhull, makehull, updatecl

Examples

 1
 2
 3
 4
 5
 6
 7
 8
 9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
## Model spectra using PROSAIL
parameter <- data.frame(N = rep.int(c(1, 1.5),2), LAI = c(1,1,3,3))
spec <- PROSAIL(parameterList=parameter)
## Mask parts not necessary for the example
mask(spec) <- c(1600, 2600)

## Transform spectra
spec_clman <- transformSpeclib(spec, method = "sh", out = "raw")

## Plot original line
par(mfrow = c(1,2))
plot(spec_clman, ispec = 1, xlim = c(1100, 1300),ylim=c(0.17,0.21))

## Find wavelength of fix point to be deleted
getcp(spec_clman, 1, subset = c(1100, 1300))

## Delete all fix points between 1200 and 1240 nm
spec_clman <- deletecp(spec_clman, 1, c(1200:1240))

## Plot new line
plot(spec_clman, ispec = 1, xlim = c(1100, 1300),ylim=c(0.17,0.21))

## Check new hull
hull <- checkhull(spec_clman, 1)
hull$error

hsdar documentation built on June 21, 2018, 9 a.m.