hsstan: Hierarchical Shrinkage Stan Models for Biomarker Selection

Linear and logistic regression models penalized with hierarchical shrinkage priors for selection of biomarkers (or more general variable selection), which can be fitted using Stan (Carpenter et al. (2017) <doi:10.18637/jss.v076.i01>). It implements the horseshoe and regularized horseshoe priors (Piironen and Vehtari (2017) <doi:10.1214/17-EJS1337SI>), as well as the projection predictive selection approach to recover a sparse set of predictive biomarkers (Piironen, Paasiniemi and Vehtari (2018) <arXiv:1810.02406>).

Package details

AuthorMarco Colombo [aut, cre] (<https://orcid.org/0000-0001-6672-0623>), Paul McKeigue [aut] (<https://orcid.org/0000-0002-5217-1034>), Athina Spiliopoulou [ctb] (<https://orcid.org/0000-0002-5929-6585>)
MaintainerMarco Colombo <[email protected]>
LicenseGPL-3
Version0.6
URL https://github.com/mcol/hsstan
Package repositoryView on CRAN
Installation Install the latest version of this package by entering the following in R:
install.packages("hsstan")

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hsstan documentation built on Sept. 22, 2019, 5:06 p.m.