color_biplot_by_discrete: Colors a biplot according to a vector with discrete values

In hypergate: Machine Learning of Hyperrectangular Gating Strategies for High-Dimensional Cytometry

Colors a biplot according to a vector with discrete values

Description

Colors a biplot according to a vector with discrete values

Usage

color_biplot_by_discrete(
  matrix,
  discrete_vector,
  ...,
  bty = "l",
  pch = 16,
  cex = 0.5,
  colors = NULL
)

Arguments

matrix	a two columns matrix
discrete_vector	a vector of size nrow(matrix)
...	passed to plot
bty	passed to plot
pch	passed to plot
cex	passed to plot
colors	Palette to used named after the unique elements of discrete_vector. Generated from rainbow() if missing.

Examples

data(Samusik_01_subset)
levels=unique(sort(Samusik_01_subset$labels))
colors=setNames(colorRampPalette(palette())(length(levels)),sort(levels))
with(Samusik_01_subset,color_biplot_by_discrete(matrix=tsne,discrete_vector=labels,colors=colors))

hypergate documentation built on Aug. 31, 2023, 5:12 p.m.