iNEXT: Interpolation and Extrapolation for Species Diversity

Share:

Provides simple functions to compute and plot two types (sample-size- and coverage-based) rarefaction and extrapolation of species diversity (Hill numbers) for individual-based (abundance) data or sampling-unit- based (incidence) data.

Author
T. C. Hsieh, K. H. Ma and Anne Chao
Date of publication
2016-11-12 15:47:13
Maintainer
T. C. Hsieh <euler96@gmail.com>
License
GPL (>= 3)
Version
2.0.12
URLs

View on CRAN

Man pages

ant
Ant species incidence frequencies data
as.abucount
Transform abundance raw data to abundance row-sum counts...
as.incfreq
Transform incidence raw data to incidence frequencies (iNEXT...
bird
Bird abundance-based data
ChaoRichness
Estimation of species richness
ChaoShannon
Estimation of Shannon entropy/diversity
ChaoSimpson
Estimation of Gini-Simpson index or Simpson diversity
ciliates
Three soil samples
DataInfo
Exhibit basic data information
estimateD
Compute species diversity with a particular of sample...
fortify.iNEXT
Fortify method for classes from the iNEXT package.
ggiNEXT
ggplot2 extension for an iNEXT object
iNEXT
iNterpolation and EXTrapolation of Hill number
iNEXT-package
Interpolation and extrapolation for species diversity
plot.iNEXT
Plotting iNEXT object
print.iNEXT
Printing iNEXT object
spider
Spider species abundances/frequencies

Files in this package

iNEXT
iNEXT/inst
iNEXT/inst/CITATION
iNEXT/inst/doc
iNEXT/inst/doc/Introduction.Rmd
iNEXT/inst/doc/Introduction.R
iNEXT/inst/doc/Introduction.html
iNEXT/tests
iNEXT/tests/testthat.R
iNEXT/tests/testthat
iNEXT/tests/testthat/test-iNEXT.R
iNEXT/NAMESPACE
iNEXT/NEWS
iNEXT/data
iNEXT/data/ciliates.rda
iNEXT/data/bird.rda
iNEXT/data/ant.rda
iNEXT/data/spider.rda
iNEXT/R
iNEXT/R/EstIndex.R
iNEXT/R/JADE.R
iNEXT/R/plot.R
iNEXT/R/ggiNEXT.R
iNEXT/R/invChat.R
iNEXT/R/iNEXT.r
iNEXT/vignettes
iNEXT/vignettes/Introduction.Rmd
iNEXT/MD5
iNEXT/README
iNEXT/README/README-ex5-3.png
iNEXT/README/README-ex1b-1.png
iNEXT/README/README-ex5-2.png
iNEXT/README/README-ex3-1.png
iNEXT/README/README-ex1-1.png
iNEXT/README/README-ex3-2.png
iNEXT/README/README-ex2-1.png
iNEXT/README/README-ex5-1.png
iNEXT/build
iNEXT/build/vignette.rds
iNEXT/DESCRIPTION
iNEXT/man
iNEXT/man/print.iNEXT.Rd
iNEXT/man/as.abucount.Rd
iNEXT/man/fortify.iNEXT.Rd
iNEXT/man/iNEXT-package.Rd
iNEXT/man/ggiNEXT.Rd
iNEXT/man/plot.iNEXT.Rd
iNEXT/man/as.incfreq.Rd
iNEXT/man/spider.Rd
iNEXT/man/bird.Rd
iNEXT/man/ChaoSimpson.Rd
iNEXT/man/ChaoShannon.Rd
iNEXT/man/ChaoRichness.Rd
iNEXT/man/iNEXT.Rd
iNEXT/man/estimateD.Rd
iNEXT/man/ciliates.Rd
iNEXT/man/DataInfo.Rd
iNEXT/man/ant.Rd