rv.coef: Computes the RV coefficient

In iTOP: Inferring the Topology of Omics Data

Description

Computes the RV coefficient between dataset 1 and dataset 2. You'll typically won't need to call this function directly, but should use rv.cor.matrix() instead, as it will make determining partial RV coefficients, p-values and confidence intervals easier later on.

Usage

rv.coef(S1, S2)

Arguments

S1	Configuration matrix corresponding to dataset 1
S2	Configuration matrix corresponding to dataset 2

Value

The RV coefficient between dataset 1 and dataset 2

Examples

set.seed(2)
n = 100
p = 100
x1 = matrix(rnorm(n*p), n, p)
x2 = x1 + matrix(rnorm(n*p), n, p)
S1 = compute.config.matrix(x1)
S2 = compute.config.matrix(x1)
rv.coef(S1, S2)

Example output

     [,1]
[1,]    1

iTOP documentation built on May 2, 2019, 3:44 a.m.