Man pages for idmodelr
Infectious Disease Model Library and Utilities
| add_pointer_struct | Adds Pointer Structure to R objects |
| aggregate_model | A Function to Apply Multiple Aggregations to Model Output |
| aggregate_model_internal | An Internal Function to Aggregate Model Output Using other... |
| combine_strat_model_output | Reduces the Dimensionality of a Stratified Model |
| combine_to_age_model | Combine an Infectious Disease Model To a Demographic Model |
| estimate_norm_dist_from_ci | A Function to Estimate a Normal Distribution from Credible or... |
| gather_strat_multi_variable | A Function to Gather Multiple Stratified Variables into a... |
| gather_strat_variable | A Function to Gather a Stratified Variable into a Tidy Format |
| generate_parameter_permutations | A Function to Generate Parameter Permutations |
| idmodelr-package | idmodelr: Infectious Disease Model Library and Utilities |
| model_details | Model Details |
| model_df_to_vector | Extracts a Single Column, Summarises if from Simulation |
| parameter_details | Parameter Details |
| plot_model | Plot Compartment Populations over Time for a Model Simulation |
| required_parameters | Lookup the Details of Parameters Required by a Model |
| scenario_analysis | A Function to Perform Scenario Analysis for a Generic Model... |
| SEI_demographics_ode | Susceptible-Exposed-Infected Model with Simple Demographics |
| SEI_ode | Susceptible-Exposed-Infected Model |
| SEIR_demographics_ode | Susceptible-Exposed-Infected-Recovered Model with Simple... |
| SEIR_ode | Susceptible-Exposed-Infected-Recovered Model |
| SEIRS_demographics_ode | Susceptible-Exposed-Infected-Recovered-Susceptible Model with... |
| SEIRS_ode | Susceptible-Exposed-Infected-Recovered-Susceptible Model |
| SEIS_demographics_ode | Susceptible-Exposed-Infected-Susceptible Model with Simple... |
| SEIS_ode | Susceptible-Exposed-Infected-Susceptible Model |
| SHLIR_demographics_ode | Susceptible-High-risk-latent-Low-risk-latent-Infected-Recovered... |
| SHLIR_ode | Susceptible-High-risk-latent-Low-risk-latent-Infected-Recovered... |
| SHLITR_demographics_ode | Susceptible-High-risk-latent-Low-risk-latent-Infected-Treated-Recovered... |
| SHLITR_ode | Susceptible-High-risk-latent-Low-risk-latent-Infected-Treated-Recovered... |
| SHLITR_risk_demographics_ode | Susceptible-High-risk-latent-Low-risk-latent-Infected-Treated-Recovered... |
| SHLITR_risk_ode | Susceptible-High-risk-latent-Low-risk-latent-Infected-Treated-Recovered... |
| SI_demographics_ode | Susceptible-Infected Model with Simple Demographics |
| simulate_model | A Function to Simulate a Model from a Generic Simulation... |
| SI_ode | Susceptible-Infected Model |
| SIR_demographics_ode | Susceptible-Infected-Recovered Model with Simple Demographics |
| SIR_ode | Susceptible-Infected-Recovered Model |
| SIRS_demographics_ode | Susceptible-Infected-Recovered-Susceptible Model with Simple... |
| SIRS_ode | Susceptible-Infected-Recovered-Susceptible Model |
| SIRS_vaccination_demographics_ode | Susceptible-Infected-Recovered-Susceptible Model with Simple... |
| SIRS_vaccination_ode | Susceptible-Infected-Recovered-Susceptible Model with... |
| SIR_vaccination_demographics_ode | Susceptible-Infected-Recovered Model with Simple Demographics... |
| SIR_vaccination_ode | Susceptible-Infected-Recovered Model with Vaccination |
| SIS_demographics_ode | Susceptible-Infected-Susceptible Model with Simple... |
| SIS_ode | Susceptible-Infected-Susceptible Model |
| solve_ode | A Simple Wrapper for lsoda |
| summarise_model | Summarise a Model Simulation |
| summarise_strat_var | Sum a Stratified Variable |
| summarise_var_by_strat | Sum a Stratified Variable by Stratification Level |
