plot_model | R Documentation |
Make separate plots for each model compartment. Assumes model output is structured
as that produced from solve_ode
.
plot_model(sim, prev_sim = NULL, model_labels = NULL, facet = TRUE)
sim |
A tibble of model output as formatted by |
prev_sim |
A second tibble of model output formatted as for |
model_labels |
A character vector of model names. Defaults to |
facet |
Logical, defaults to |
A Plot of each model compartments population over time.
## Intialise N = 100000 I_0 = 1 S_0 = N - I_0 R_0 = 1.1 beta = R_0 ##Time for model to run over tbegin = 0 tend = 50 times <- seq(tbegin, tend, 1) ##Vectorise input parameters <- as.matrix(c(beta = beta)) inits <- as.matrix(c(S = S_0, I = I_0)) sim <- solve_ode(model = SI_ode, inits, parameters, times, as.data.frame = TRUE) plot_model(sim, facet = FALSE) plot_model(sim, facet = TRUE) ## Compare with an updated model run #'## Intialise R_0 = 1.3 beta = R_0 parameters <- as.matrix(c(beta = beta)) new_sim <- solve_ode(model = SI_ode, inits, parameters, times, as.data.frame = TRUE) plot_model(new_sim,sim, facet = FALSE) plot_model(new_sim, sim, facet = TRUE) ## Passing in the simulations as a list plot_model(list("Current" = new_sim, "Previous" = sim), facet = TRUE)
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