Nothing
NEWS.md
In ijtiff: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files
ijtiff 2.3.3
BUG FIXES
- Ignore
pkg-config when it says to use -ljbig or -lLerc.
ijtiff 2.3.2
MINOR IMPROVEMENTS
- Add
libwebp and libzstd to README installation instructions.
ijtiff 2.3.1
BUG FIXES
- Fix test for new waldo.
ijtiff 2.3.0
MINOR IMPROVEMENTS
- Use
rlang::abort() and its error message formatting.
- Move away from
magrittr's %<>%.
ijtiff 2.2.8
BUG FIXES
- Fix headings in NEWS.md.
ijtiff 2.2.7
BUG FIXES
- Fix for new libtiff using C99's
<stdint.h>.
ijtiff 2.2.6
BUG FIXES
- Suppress unhelpful warnings during configure when
pkg-config doesn't find info for libtiff.
- Remove
LazyData from DESCRIPTION (was causing CRAN note).
ijtiff 2.2.5
BUG FIXES
- Typo fix for
configure. At one point there was a call of pkg-configs instead of pkg-config.
- Also now all compile flags from
pkg-config --libs and pkg-config --libs --static are used every time.
ijtiff 2.2.4
BUG FIXES
- Fix for
configure error messages.
ijtiff 2.2.3
BUG FIXES
- Make
configure more portable by using sh instead of bash.
ijtiff 2.2.2
BUG FIXES
- Insist on bug-fixed
strex >= 1.4.
ijtiff 2.2.1
BUG FIXES
- Insist on
strex >= 1.3.1 to avoid a garbage collection issue.
ijtiff 2.2.0
NEW FEATURES
- The package now works on 32-bit Windows (thanks to PR #12 from Jeroen Ooms).
BUG FIXES
- Fix tests by making use of
testthat::test_path().
ijtiff 2.1.2
BUG FIXES
- Fix some typos in the vignettes.
ijtiff 2.1.1
BUG FIXES
- Fix a PROTECTion error.
ijtiff 2.1.0
NEW FEATURES
- Add support for images with colormaps (also known as lookup tables (LUTs)).
- Add a print method for
ijtiff_imgs.
ijtiff 2.0.5
BUG FIXES
- Fix a test that failed due to breaking changes in
tibble.
ijtiff 2.0.4
MINOR IMPROVEMENTS
- Include rOpenSci docs in
DESCRIPTION as URL.
BUG FIXES
- Sometimes
pkg-config declares that ijtiff needs JBIG_KIT (compile flag -ljbig) at compile time. This is incorrect and it often causes users installation pain. This fix is a hack that removes this compile flag from the pkg-config output.
ijtiff 2.0.3
BUG FIXES
libjpeg needs to be in SystemRequirements.
ijtiff 2.0.2
BUG FIXES
- For ImageJ-written images, if
n_slices and n_frames are both specified, that should be OK if they're equal.
ijtiff 2.0.1
BUG FIXES
- Insist on latest, bug-fixed
filesstrings 3.1.5.
ijtiff 2.0.0
BREAKING CHANGES
get_tiff_tags_reference() is now tif_tags_reference().count_imgs() is now count_frames().
NEW FEATURES
- It is now possible to read only certain frames of a TIFF image thanks to the
frames argument of read_tif().
read_tif() and read_tags() now have the aliases tif_read() and tags_read() to comply with the rOpenSci object_verb() style.
BUG FIXES
- Include
sys/types.h for greater type compatibility.
ijtiff 1.5.1
BUG FIXES
- Require necessary version of
glue.
- Fix dimension-related bug in
as_EBImage().
- Require latest (less-buggy)
filesstrings.
ijtiff 1.5.0
NEW FEATURES
- Allow ZIP compression (which seems to be the best).
BUG FIXES
write_txt_img() was using decimal points for integers (e.g. 3.000 instead of just 3).
ijtiff 1.4.2
BUG FIXES
- Hacky fix for
configure script to deal with lack of -ljbig on Solaris.
- Trim the package to below 5MB by compressing a few TIFF files.
ijtiff 1.4.1
NEW FEATURES
- The package is now lighter in appearance because it doesn't explicitly depend on
tibble.
BUG FIXES
- The configure script now allows for needing
--static with pkg-config.
ijtiff 1.4.0
NEW FEATURES
- A
pkgdown website.
MINOR IMPROVEMENTS
- Better vignettes.
- Better error messages.
ijtiff 1.3.0
NEW FEATURES
- Conversion functions
linescan_to_stack() and stack_to_linescan() useful for FCS data.
ijtiff 1.2.0
MINOR IMPROVEMENTS
- Improved the description of the package in DESCRIPTION, vignette and README.
- Added a hex sticker.
- Limited support for tiled images thanks to new author Kent Johnson.
write_tif() is now slightly (<10%) faster.write_tif() messages are now more informative.
ijtiff 1.1.0
NEW FEATURES
count_imgs() counts the number of images in a TIFF file without reading the images themselves.read_tags() reads the tags from TIFF images without reading the images themselves.
MINOR IMPROVEMENTS
- Now includes citation information.
- C code is more readable.
display() is more flexible, accepting 3 and 4-dimensional arrays, just displaying the first frame from the first channel.
ijtiff 1.0.0
PEER REVIEW
- The package is now peer reviewed by ROpenSci.
ijtiff 0.3.0
MINOR IMPROVEMENTS
- Improve README and vignette with more tangible and fun example.
BUG FIXES
- Fix windows
libtiff issues (thanks to Jeroen Ooms).
- Found some ImageJ-written TIFFs that weren't being read correctly and fixed that.
- Fix
protection stack overflow error for TIFFs with many images.
ijtiff 0.2.0
- First CRAN release.
MINOR IMPROVEMENTS
- Include handy shortcuts for 2- and 3-dimensional arrays.
- Messasges to inform the user about what kind of image is being read/written.
ijtiff 0.1.0
- First github release.
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ijtiff documentation built on Oct. 9, 2023, 1:07 a.m.
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ijtiff 2.3.3
BUG FIXES
- Ignore
pkg-configwhen it says to use-ljbigor-lLerc.
ijtiff 2.3.2
MINOR IMPROVEMENTS
- Add
libwebpandlibzstdtoREADMEinstallation instructions.
ijtiff 2.3.1
BUG FIXES
- Fix test for new waldo.
ijtiff 2.3.0
MINOR IMPROVEMENTS
- Use
rlang::abort()and its error message formatting. - Move away from
magrittr's%<>%.
ijtiff 2.2.8
BUG FIXES
- Fix headings in NEWS.md.
ijtiff 2.2.7
BUG FIXES
- Fix for new libtiff using C99's
<stdint.h>.
ijtiff 2.2.6
BUG FIXES
- Suppress unhelpful warnings during configure when
pkg-configdoesn't find info for libtiff. - Remove
LazyDatafromDESCRIPTION(was causing CRAN note).
ijtiff 2.2.5
BUG FIXES
- Typo fix for
configure. At one point there was a call ofpkg-configsinstead ofpkg-config. - Also now all compile flags from
pkg-config --libsandpkg-config --libs --staticare used every time.
ijtiff 2.2.4
BUG FIXES
- Fix for
configureerror messages.
ijtiff 2.2.3
BUG FIXES
- Make
configuremore portable by usingshinstead ofbash.
ijtiff 2.2.2
BUG FIXES
- Insist on bug-fixed
strex>= 1.4.
ijtiff 2.2.1
BUG FIXES
- Insist on
strex>= 1.3.1 to avoid a garbage collection issue.
ijtiff 2.2.0
NEW FEATURES
- The package now works on 32-bit Windows (thanks to PR #12 from Jeroen Ooms).
BUG FIXES
- Fix tests by making use of
testthat::test_path().
ijtiff 2.1.2
BUG FIXES
- Fix some typos in the vignettes.
ijtiff 2.1.1
BUG FIXES
- Fix a PROTECTion error.
ijtiff 2.1.0
NEW FEATURES
- Add support for images with colormaps (also known as lookup tables (LUTs)).
- Add a print method for
ijtiff_imgs.
ijtiff 2.0.5
BUG FIXES
- Fix a test that failed due to breaking changes in
tibble.
ijtiff 2.0.4
MINOR IMPROVEMENTS
- Include rOpenSci docs in
DESCRIPTIONasURL.
BUG FIXES
- Sometimes
pkg-configdeclares thatijtiffneeds JBIG_KIT (compile flag-ljbig) at compile time. This is incorrect and it often causes users installation pain. This fix is a hack that removes this compile flag from thepkg-configoutput.
ijtiff 2.0.3
BUG FIXES
libjpegneeds to be inSystemRequirements.
ijtiff 2.0.2
BUG FIXES
- For ImageJ-written images, if
n_slicesandn_framesare both specified, that should be OK if they're equal.
ijtiff 2.0.1
BUG FIXES
- Insist on latest, bug-fixed
filesstrings3.1.5.
ijtiff 2.0.0
BREAKING CHANGES
get_tiff_tags_reference()is nowtif_tags_reference().count_imgs()is nowcount_frames().
NEW FEATURES
- It is now possible to read only certain frames of a TIFF image thanks to the
framesargument ofread_tif(). read_tif()andread_tags()now have the aliasestif_read()andtags_read()to comply with the rOpenSciobject_verb()style.
BUG FIXES
- Include
sys/types.hfor greater type compatibility.
ijtiff 1.5.1
BUG FIXES
- Require necessary version of
glue. - Fix dimension-related bug in
as_EBImage(). - Require latest (less-buggy)
filesstrings.
ijtiff 1.5.0
NEW FEATURES
- Allow ZIP compression (which seems to be the best).
BUG FIXES
write_txt_img()was using decimal points for integers (e.g. 3.000 instead of just 3).
ijtiff 1.4.2
BUG FIXES
- Hacky fix for
configurescript to deal with lack of-ljbigon Solaris. - Trim the package to below 5MB by compressing a few TIFF files.
ijtiff 1.4.1
NEW FEATURES
- The package is now lighter in appearance because it doesn't explicitly depend on
tibble.
BUG FIXES
- The configure script now allows for needing
--staticwithpkg-config.
ijtiff 1.4.0
NEW FEATURES
- A
pkgdownwebsite.
MINOR IMPROVEMENTS
- Better vignettes.
- Better error messages.
ijtiff 1.3.0
NEW FEATURES
- Conversion functions
linescan_to_stack()andstack_to_linescan()useful for FCS data.
ijtiff 1.2.0
MINOR IMPROVEMENTS
- Improved the description of the package in DESCRIPTION, vignette and README.
- Added a hex sticker.
- Limited support for tiled images thanks to new author Kent Johnson.
write_tif()is now slightly (<10%) faster.write_tif()messages are now more informative.
ijtiff 1.1.0
NEW FEATURES
count_imgs()counts the number of images in a TIFF file without reading the images themselves.read_tags()reads the tags from TIFF images without reading the images themselves.
MINOR IMPROVEMENTS
- Now includes citation information.
- C code is more readable.
display()is more flexible, accepting 3 and 4-dimensional arrays, just displaying the first frame from the first channel.
ijtiff 1.0.0
PEER REVIEW
- The package is now peer reviewed by ROpenSci.
ijtiff 0.3.0
MINOR IMPROVEMENTS
- Improve README and vignette with more tangible and fun example.
BUG FIXES
- Fix windows
libtiffissues (thanks to Jeroen Ooms). - Found some ImageJ-written TIFFs that weren't being read correctly and fixed that.
- Fix
protection stack overflowerror for TIFFs with many images.
ijtiff 0.2.0
- First CRAN release.
MINOR IMPROVEMENTS
- Include handy shortcuts for 2- and 3-dimensional arrays.
- Messasges to inform the user about what kind of image is being read/written.
ijtiff 0.1.0
- First github release.
Try the ijtiff package in your browser
Any scripts or data that you put into this service are public.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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