ijtiff_img: 'ijtiff_img' class.

In ijtiff: Comprehensive TIFF I/O with Full Support for 'ImageJ' TIFF Files

ijtiff_img class.

Description

A class for images which are read or to be written by the ijtiff package.

Usage

ijtiff_img(img, ...)

as_ijtiff_img(img, ...)

Arguments

img

An array representing the image. For a single-plane, grayscale image, use a matrix img[y, x]. For a multi-plane, grayscale image, use a 3-dimensional array img[y, x, plane]. For a multi-channel, single-plane image, use a 4-dimensional array with a redundant 4th slot img[y, x, channel, ] (see ijtiff_img 'Examples' for an example). For a multi-channel, multi-plane image, use a 4-dimensional array img[y, x, channel, plane].

...

Named arguments which are set as attributes.

Value

A 4 dimensional array representing an image, indexed by img[y, x, channel, frame], with selected attributes.

Examples

img <- matrix(1:4, nrow = 2) # to be a single-channel, grayscale image
ijtiff_img(img, description = "single-channel, grayscale")
img <- array(seq_len(2^3), dim = rep(2, 3)) # 1 channel, 2 frame
ijtiff_img(img, description = "blah blah blah")
img <- array(seq_len(2^3), dim = c(2, 2, 2, 1)) #  2 channel, 1 frame
ijtiff_img(img, description = "blah blah")
img <- array(seq_len(2^4), dim = rep(2, 4)) # 2 channel, 2 frame
ijtiff_img(img, software = "R")

ijtiff documentation built on Oct. 9, 2023, 1:07 a.m.