public_matrix: Get a matrix with public clonotype frequencies

In immunarch: Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires

Get a matrix with public clonotype frequencies

Description

Get a matrix with public clonotype frequencies

Usage

public_matrix(.data)

Arguments

.data

Public repertoire, an output from pubRep.

Value

Matrix with per-sample clonotype counts / proportions only.

Examples

data(immdata)
immdata$data <- lapply(immdata$data, head, 2000)
pr <- pubRep(immdata$data, .verbose = FALSE)
pr.mat <- public_matrix(pr)
dim(pr.mat)
head(pr.mat)

immunarch documentation built on Dec. 28, 2022, 2:59 a.m.