Files in immunarch
Bioinformatics Analysis of T-Cell and B-Cell Immune Repertoires

MD5
NEWS.md README.md
NAMESPACE
DESCRIPTION
R/RcppExports.R R/vis.R R/immunr_data_format.R R/spectratyping.R R/immunarch-package.R R/preprocessing.R R/dimensions.R R/gene_usage_analysis.R R/shiny.R R/overlap.R R/kmers.R R/info_theory.R R/gene_usage.R R/clustering.R R/diversity.R R/tools.R R/data_docs.R R/overlap_analysis.R R/io-savers.R R/io-utility.R R/annotation.R R/wip.R R/clonality.R R/sampling.R R/io-parsers.R R/io.R R/singlecell.R R/public.R R/explore.R R/dynamics.R
src/fill_functions.cpp
src/RcppExports.cpp
inst/doc/v1_introduction.Rmd inst/doc/v2_data.Rmd
inst/doc/v2_data.html
inst/doc/v2_data.R
inst/doc/v1_introduction.html
inst/extdata/io/Sample2.tsv.gz
inst/extdata/io/metadata.txt
inst/extdata/io/Sample3.tsv.gz
inst/extdata/io/Sample1.tsv.gz
inst/extdata/io/Sample4.tsv.gz
inst/extdata/sc/flu.csv.gz
inst/extdata/db/vdjdb.example.txt
build/vignette.rds
vignettes/v1_introduction.Rmd vignettes/v2_data.Rmd vignettes/web_only/load_10x.Rmd vignettes/web_only/v6_diversity.Rmd vignettes/web_only/v8_tracking.Rmd vignettes/web_only/v21_singlecell.Rmd vignettes/web_only/v5_gene_usage.Rmd vignettes/web_only/v7_fixvis.Rmd vignettes/web_only/load_mixcr.Rmd vignettes/web_only/v10_prop.Rmd vignettes/web_only/v9_kmers.Rmd vignettes/web_only/community.Rmd vignettes/web_only/v4_overlap.Rmd vignettes/web_only/v11_db.Rmd vignettes/web_only/v3_basic_analysis.Rmd
data/scdata.rda
data/immdata.rda
data/genesegments.rda
data/aaproperties.rda
man/vis_immunr_kmer_profile_main.Rd man/set_pb.Rd man/repClonality.Rd man/scdata.Rd man/vis_heatmap2.Rd man/repDiversity.Rd man/repOverlap.Rd man/vis.immunr_mds.Rd man/immunr_pca.Rd man/vis_box.Rd man/matrixdiagcopy.Rd man/select_barcodes.Rd man/aa_properties.Rd man/immunr_hclust.Rd man/dot-quant_column_choice.Rd man/gene_stats.Rd man/vis.immunr_inc_overlap.Rd man/repSave.Rd man/entropy.Rd man/switch_type.Rd man/dbAnnotate.Rd man/select_clusters.Rd man/vis.immunr_chao1.Rd man/pubRepFilter.Rd man/vis.immunr_hclust.Rd man/apply_symm.Rd man/aa_table.Rd man/immunr_data_format.Rd man/vis.immunr_kmeans.Rd man/repSample.Rd man/vis_textlogo.Rd man/bunch_translate.Rd man/group_from_metadata.Rd man/inc_overlap.Rd man/vis.immunr_clonal_prop.Rd man/vis_heatmap.Rd man/spectratype.Rd man/vis_hist.Rd man/geneUsageAnalysis.Rd man/gene_segments.Rd man/getKmers.Rd man/repExplore.Rd man/public_matrix.Rd man/vis.immunr_dynamics.Rd man/vis.Rd man/check_distribution.Rd man/top.Rd man/trackClonotypes.Rd man/vis_public_clonotypes.Rd man/vis.immunr_ov_matrix.Rd man/vis_circos.Rd man/pubRepApply.Rd man/repOverlapAnalysis.Rd man/geneUsage.Rd man/vis_public_frequencies.Rd man/vis.immunr_public_repertoire.Rd man/add_class.Rd man/coding.Rd man/pubRepStatistics.Rd man/has_class.Rd man/immdata.Rd man/pubRep.Rd man/repLoad.Rd man/vis.immunr_kmer_table.Rd man/vis.immunr_public_statistics.Rd man/dbLoad.Rd man/vis_bar.Rd man/vis.immunr_exp_vol.Rd man/split_to_kmers.Rd man/fixVis.Rd man/vis.immunr_gene_usage.Rd
immunarch documentation built on July 7, 2021, 9:08 a.m.