vis_heatmap | R Documentation |
Fast and easy visualisations of matrices or data frames with functions based on the ggplot2 package.
vis_heatmap( .data, .text = TRUE, .scientific = FALSE, .signif.digits = 2, .text.size = 4, .axis.text.size = NULL, .labs = c("Sample", "Sample"), .title = "Overlap", .leg.title = "Overlap values", .legend = TRUE, .na.value = NA, .transpose = FALSE, ... )
.data |
Input object: a matrix or a data frame. If matrix: column names and row names (if presented) will be used as names for labs. If data frame: the first column will be used for row names and removed from the data. Other columns will be used for values in the heatmap. |
.text |
If TRUE then plots values in the heatmap cells. If FALSE does not plot values, just plot coloured cells instead. |
.scientific |
If TRUE then uses the scientific notation for numbers (e.g., "2.0e+2"). |
.signif.digits |
Number of significant digits to display on plot. |
.text.size |
Size of text in the cells of heatmap. |
.axis.text.size |
Size of text on the axis labels. |
.labs |
A character vector of length two with names for x-axis and y-axis, respectively. |
.title |
The The text for the plot's title. |
.leg.title |
The The text for the plots's legend. Provide NULL to remove the legend's title completely. |
.legend |
If TRUE then displays a legend, otherwise removes the legend from the plot. |
.na.value |
Replace NA values with this value. By default they remain NA. |
.transpose |
Logical. If TRUE then switch rows and columns. |
... |
Other passed arguments. |
A ggplot2 object.
vis, repOverlap.
data(immdata) ov <- repOverlap(immdata$data) vis_heatmap(ov) gu <- geneUsage(immdata$data, "hs.trbj") vis_heatmap(gu)
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