vis.immunr_kmer_table | R Documentation |
Plot a distribution (bar plot) of the most frequent kmers in a data.
## S3 method for class 'immunr_kmer_table' vis( .data, .head = 100, .position = c("stack", "dodge", "fill"), .log = FALSE, ... )
.data |
Data frame with two columns "Kmers" and "Count" or a list with such data frames. See Examples. |
.head |
Number of the most frequent kmers to choose for plotting from each data frame. |
.position |
Character vector of length 1. Position of bars for each kmers. Value for the |
.log |
Logical. If TRUE then plot log-scaled plots. |
... |
Not used here. |
A ggplot2 object.
get.kmers
# Load necessary data and package. data(immdata) # Get 5-mers. imm.km <- getKmers(immdata$data[[1]], 5) # Plots for kmer proportions in each data frame in immdata. p1 <- vis(imm.km, .position = "stack") p2 <- vis(imm.km, .position = "fill") p1 + p2
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