vis.clonal_family | R Documentation |
Visualise clonal family tree: wrapper for calling on the entire repClonalFamily output
## S3 method for class 'clonal_family' vis(.data, ...)
.data |
Clonal families from 1 or multiple samples: |
... |
Not used here. |
A ggraph object.
data(bcrdata) bcr_data <- bcrdata$data clonal_family <- bcr_data %>% seqCluster(seqDist(bcr_data), .fixed_threshold = 3) %>% repGermline(.threads = 1) %>% repAlignLineage(.min_lineage_sequences = 2, .align_threads = 2, .nofail = TRUE) %>% repClonalFamily(.threads = 1, .nofail = TRUE) %>% vis()
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