vis.clonal_family: Visualise clonal family tree: wrapper for calling on the...

In immunarch: Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design in R

Visualise clonal family tree: wrapper for calling on the entire repClonalFamily output

Description

Usage

## S3 method for class 'clonal_family'
vis(.data, ...)

Arguments

.data	Clonal families from 1 or multiple samples: repClonalFamily() output.
...	Not used here.

Value

A ggraph object.

Examples

## Not run: 
data(bcrdata)
bcr_data <- bcrdata$data

clonal_family <- bcr_data %>%
  seqCluster(seqDist(bcr_data), .fixed_threshold = 3) %>%
  repGermline(.threads = 1) %>%
  repAlignLineage(.min_lineage_sequences = 2, .align_threads = 2, .nofail = TRUE) %>%
  repClonalFamily(.threads = 1, .nofail = TRUE) %>%
  vis()

## End(Not run)

immunarch documentation built on Nov. 5, 2025, 7:21 p.m.