mdsinfo: mdsinfo
In inDAGO: A GUI for Dual and Bulk RNA-Sequencing Analysis
mdsinfo R Documentation
mdsinfo
Description
Compute MDS coordinates for expression data using limma's plotMDS.
Usage
mdsinfo(matrix, top, gene.selection)
Arguments
matrix
A DGEList object.
top
Integer. Number of top most variable genes to include in MDS.
gene.selection
Method for gene selection: one of "pairwise", "common", or "logFC".
Details
This function performs multidimensional scaling (MDS) on a DGEList or
log-expression matrix using limma's "plotMDS() " function. It returns the MDS
object containing coordinates and eigenvalues without generating a plot.
Value
A list object from "plotMDS() " containing MDS coordinates and eigenvalues.
inDAGO documentation built on Aug. 8, 2025, 7:47 p.m.
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| mdsinfo | R Documentation |
mdsinfo
Description
Compute MDS coordinates for expression data using limma's plotMDS.
Usage
mdsinfo(matrix, top, gene.selection)
Arguments
matrix |
A DGEList object. |
top |
Integer. Number of top most variable genes to include in MDS. |
gene.selection |
Method for gene selection: one of "pairwise", "common", or "logFC". |
Details
This function performs multidimensional scaling (MDS) on a DGEList or log-expression matrix using limma's "plotMDS() " function. It returns the MDS object containing coordinates and eigenvalues without generating a plot.
Value
A list object from "plotMDS() " containing MDS coordinates and eigenvalues.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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