calculate.orbit.counts: Calculate orbit counts from scratch
In incgraph: Incremental Graphlet Counting for Network Optimisation
Description
Usage
Arguments
Details
Value
References
See Also
Description
calculate.orbit.counts calculates the orbit counts of the current network.
Usage
1
calculate.orbit.counts(network)
Arguments
network
An instance of the incgraph.network class
Details
The complete orbit counts is calcucated using the count5 from the orca package.
Calling this method repeatedly becomes very inefficient for evolving networks. For evolving networks, the usage
of calculate.delta is recommended.
For more details on this method, see Hočevar and Demšar (2014).
Value
An N-by-73 matrix, with N the number of nodes in the network and 1 column for each possible orbit.
The value of mat[i,j] is the number of times node i has orbit j in a subgraph in the network.
References
Hočevar, T. and Demšar J. (2014) A combinatorial approach to graphlet counting. Bioinformatics.
See Also
See new.incgraph.network for examples and usage.
incgraph documentation built on May 2, 2019, 3:48 p.m.
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Description Usage Arguments Details Value References See Also
Description
calculate.orbit.counts calculates the orbit counts of the current network.
Usage
1 | calculate.orbit.counts(network)
|
Arguments
network |
An instance of the incgraph.network class |
Details
The complete orbit counts is calcucated using the count5 from the orca package.
Calling this method repeatedly becomes very inefficient for evolving networks. For evolving networks, the usage
of calculate.delta is recommended.
For more details on this method, see Hočevar and Demšar (2014).
Value
An N-by-73 matrix, with N the number of nodes in the network and 1 column for each possible orbit.
The value of mat[i,j] is the number of times node i has orbit j in a subgraph in the network.
References
Hočevar, T. and Demšar J. (2014) A combinatorial approach to graphlet counting. Bioinformatics.
See Also
See new.incgraph.network for examples and usage.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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