calculate.orbit.counts: Calculate orbit counts from scratch
In incgraph: Incremental Graphlet Counting for Network Optimisation
View source: R/incgraph_wrapper.R
calculate.orbit.counts R Documentation
Calculate orbit counts from scratch
Description
calculate.orbit.counts calculates the orbit counts of the current network.
Usage
calculate.orbit.counts(network)
Arguments
network
An instance of the incgraph.network class
Details
The complete orbit counts is calcucated using the orca::count5().
Calling this method repeatedly becomes very inefficient for evolving networks. For evolving networks, the usage
of calculate.delta() is recommended.
For more details on this method, see Hočevar and Demšar (2014).
Value
An N-by-73 matrix, with N the number of nodes in the network and 1 column for each possible orbit.
The value of mat[i,j] is the number of times node i has orbit j in a subgraph in the network.
References
Hočevar, T. and Demšar J. (2014) A combinatorial approach to graphlet counting. Bioinformatics.
See Also
See new.incgraph.network() for examples and usage.
incgraph documentation built on April 3, 2025, 7:11 p.m.
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View source: R/incgraph_wrapper.R
| calculate.orbit.counts | R Documentation |
Calculate orbit counts from scratch
Description
calculate.orbit.counts calculates the orbit counts of the current network.
Usage
calculate.orbit.counts(network)
Arguments
network |
An instance of the incgraph.network class |
Details
The complete orbit counts is calcucated using the orca::count5().
Calling this method repeatedly becomes very inefficient for evolving networks. For evolving networks, the usage
of calculate.delta() is recommended.
For more details on this method, see Hočevar and Demšar (2014).
Value
An N-by-73 matrix, with N the number of nodes in the network and 1 column for each possible orbit.
The value of mat[i,j] is the number of times node i has orbit j in a subgraph in the network.
References
Hočevar, T. and Demšar J. (2014) A combinatorial approach to graphlet counting. Bioinformatics.
See Also
See new.incgraph.network() for examples and usage.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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