inctools: Incidence Estimation Tools

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Tools for estimating incidence from biomarker data in cross- sectional surveys and for calibrating tests for recent infection.

Author
Alex Welte [aut], Eduard Grebe [cre, aut], Avery McIntosh [aut], Petra Bäumler [aut], Reshma Kassanjee [ctb], Hilmarie Brand [ctb], Cari Van Schalkwyk [ctb], Yuruo Li [ctb], Simon Daniel [ctb], Stefano Ongarello [aut], Yusuke Asai [ctb]
Date of publication
2016-09-13 14:41:24
Maintainer
Eduard Grebe <eduardgrebe@sun.ac.za>
License
GPL-3
Version
1.0.7
URLs

View on CRAN

Man pages

excalibdata
The dataset 'excalibdata.Rdata' contains example data from an...
frrcal
Estimate subject-level false-recent rate for a given time...
inccounts
Incidence and incidence difference statistics from trinomial...
incpower
Power and sample size calculation for assay-based incidence...
incprecision
Sample size or precision calculation
incprops
Incidence and incidence difference statistics from trinomial...
inctools
inctools: a package for incidence estimation
mdrical
Estimate MDRI (point estimate and confidence interval) using...
prevcounts
Prevalence and Relative Standard Errors by Counts

Files in this package

inctools
inctools/inst
inctools/inst/doc
inctools/inst/doc/Introduction.Rmd
inctools/inst/doc/TestCalibration.R
inctools/inst/doc/SurveyDesign.html
inctools/inst/doc/EstimatingIncidence.R
inctools/inst/doc/EstimatingIncidence.html
inctools/inst/doc/EstimatingIncidence.Rmd
inctools/inst/doc/TestCalibration.html
inctools/inst/doc/SurveyDesign.Rmd
inctools/inst/doc/Introduction.html
inctools/inst/doc/TestCalibration.Rmd
inctools/inst/doc/SurveyDesign.R
inctools/NAMESPACE
inctools/data
inctools/data/excalibdata.RData
inctools/R
inctools/R/inctools.R
inctools/R/power.R
inctools/R/calibration_mdri.R
inctools/R/precision.R
inctools/R/excalibdata.R
inctools/R/incidence.R
inctools/R/calibration_frr.R
inctools/vignettes
inctools/vignettes/Introduction.Rmd
inctools/vignettes/EstimatingIncidence.Rmd
inctools/vignettes/SurveyDesign.Rmd
inctools/vignettes/TestCalibration.Rmd
inctools/MD5
inctools/build
inctools/build/vignette.rds
inctools/DESCRIPTION
inctools/man
inctools/man/inctools.Rd
inctools/man/mdrical.Rd
inctools/man/prevcounts.Rd
inctools/man/frrcal.Rd
inctools/man/inccounts.Rd
inctools/man/incprops.Rd
inctools/man/excalibdata.Rd
inctools/man/incpower.Rd
inctools/man/incprecision.Rd