indicspecies: Relationship Between Species and Groups of Sites

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Functions to assess the strength and statistical significance of the relationship between species occurrence/abundance and groups of sites. Also includes functions to measure species niche breadth using resource categories.

Author
Miquel De Caceres, Florian Jansen
Date of publication
2016-08-30 01:59:42
Maintainer
Miquel De Caceres <miquelcaceres@gmail.com>
License
GPL (>= 2)
Version
1.7.6

View on CRAN

Man pages

birds
Birds resource use data
combinespecies
Combines species from a community table
coverage
Coverage of a set of indicators
indicators
Indicator analysis for species combinations
indicspecies-package
Studying the statistical relationship between species and...
multipatt
Multi-level pattern analysis
nicheoverlap
Metrics to compare pairs of resource niches
nichevar
Resource niche metrics for a single niche
pigeons
Pigeon seed consumption data
plotniche
Draws a single resource niche
predict.indicators
Predicts site group from indicators
pruneindicators
Determines the best subset of indicators
signassoc
Statistical significance of species site-group associations
strassoc
Strength of species site-group associations
summary.multipatt
Summarizing multi-level pattern analysis
wetland
Wetland vegetation data set

Files in this package

indicspecies
indicspecies/inst
indicspecies/inst/CITATION
indicspecies/inst/doc
indicspecies/inst/doc/PigeonExample.pdf
indicspecies/inst/doc/indicspeciesTutorial.Rnw
indicspecies/inst/doc/indicspeciesTutorial.R
indicspecies/inst/doc/indicspeciesTutorial.pdf
indicspecies/inst/doc/PigeonExample.Rnw
indicspecies/inst/doc/PigeonExample.R
indicspecies/NAMESPACE
indicspecies/data
indicspecies/data/pigeons.rda
indicspecies/data/birds.rda
indicspecies/data/wetland.rda
indicspecies/R
indicspecies/R/plot.indicators.r
indicspecies/R/indicators.r
indicspecies/R/combinespecies.r
indicspecies/R/pruneindicators.r
indicspecies/R/nichepref.R
indicspecies/R/signassoc.r
indicspecies/R/predict.indicators.r
indicspecies/R/nichedispl.R
indicspecies/R/strassoc.r
indicspecies/R/multipatt.r
indicspecies/R/print.indicators.r
indicspecies/R/nicheoverlap.R
indicspecies/R/plotniche.R
indicspecies/R/nichecentroid.R
indicspecies/R/summary.indicators.R
indicspecies/R/summary.multipatt.r
indicspecies/R/nichevar.R
indicspecies/R/coverage.r
indicspecies/R/plotcoverage.r
indicspecies/vignettes
indicspecies/vignettes/PigeonExample-019.pdf
indicspecies/vignettes/indicspeciesTutorial-030.pdf
indicspecies/vignettes/indicspeciesTutorial.Rnw
indicspecies/vignettes/indicspeciesTutorial-028.pdf
indicspecies/vignettes/PigeonExample-017.pdf
indicspecies/vignettes/indicspecies.bib
indicspecies/vignettes/PigeonExample-004.pdf
indicspecies/vignettes/PigeonExample-014.pdf
indicspecies/vignettes/PigeonExample-005.pdf
indicspecies/vignettes/resniche.bib
indicspecies/vignettes/PigeonExample.Rnw
indicspecies/vignettes/indicspeciesTutorial-029.pdf
indicspecies/vignettes/indicspeciesTutorial-032.pdf
indicspecies/vignettes/PigeonExample-015.pdf
indicspecies/vignettes/indicspeciesTutorial-034.pdf
indicspecies/vignettes/PigeonExample-013.pdf
indicspecies/vignettes/indicspeciesTutorial-031.pdf
indicspecies/vignettes/PigeonExample-018.pdf
indicspecies/vignettes/PigeonExample-012.pdf
indicspecies/vignettes/PigeonExample-010.pdf
indicspecies/vignettes/PigeonExample-016.pdf
indicspecies/vignettes/PigeonExample-011.pdf
indicspecies/MD5
indicspecies/build
indicspecies/build/vignette.rds
indicspecies/DESCRIPTION
indicspecies/man
indicspecies/man/summary.multipatt.Rd
indicspecies/man/nichevar.Rd
indicspecies/man/strassoc.Rd
indicspecies/man/signassoc.Rd
indicspecies/man/coverage.Rd
indicspecies/man/multipatt.Rd
indicspecies/man/wetland.Rd
indicspecies/man/pruneindicators.Rd
indicspecies/man/combinespecies.Rd
indicspecies/man/birds.Rd
indicspecies/man/nicheoverlap.Rd
indicspecies/man/plotniche.Rd
indicspecies/man/predict.indicators.Rd
indicspecies/man/pigeons.Rd
indicspecies/man/indicators.Rd
indicspecies/man/indicspecies-package.Rd