indicspecies: Relationship Between Species and Groups of Sites
Version 1.7.6

Functions to assess the strength and statistical significance of the relationship between species occurrence/abundance and groups of sites. Also includes functions to measure species niche breadth using resource categories.

AuthorMiquel De Caceres, Florian Jansen
Date of publication2016-08-30 01:59:42
MaintainerMiquel De Caceres <miquelcaceres@gmail.com>
LicenseGPL (>= 2)
Version1.7.6
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("indicspecies")

Getting started

Package overview

Popular man pages

indicators: Indicator analysis for species combinations
indicspecies-package: Studying the statistical relationship between species and...
nicheoverlap: Metrics to compare pairs of resource niches
plotniche: Draws a single resource niche
signassoc: Statistical significance of species site-group associations
summary.multipatt: Summarizing multi-level pattern analysis
wetland: Wetland vegetation data set
See all...

All man pages Function index File listing

Man pages

birds: Birds resource use data
combinespecies: Combines species from a community table
coverage: Coverage of a set of indicators
indicators: Indicator analysis for species combinations
indicspecies-package: Studying the statistical relationship between species and...
multipatt: Multi-level pattern analysis
nicheoverlap: Metrics to compare pairs of resource niches
nichevar: Resource niche metrics for a single niche
pigeons: Pigeon seed consumption data
plotniche: Draws a single resource niche
predict.indicators: Predicts site group from indicators
pruneindicators: Determines the best subset of indicators
signassoc: Statistical significance of species site-group associations
strassoc: Strength of species site-group associations
summary.multipatt: Summarizing multi-level pattern analysis
wetland: Wetland vegetation data set

Functions

birds Man page
birdsbreed Man page
birdswinter Man page
combinespecies Man page Source code
coverage Man page Source code
dfood Man page
diet.barcelona Man page
diet.moia Man page
indicators Man page Source code
indicspecies Man page
indicspecies-package Man page
multipatt Man page Source code
nichecentroid Man page Source code
nichedispl Man page Source code
nicheoverlap Man page Source code
nichepref Man page Source code
nichevar Man page Source code
pigeons Man page
plot.indicators Man page Source code
plotcoverage Man page Source code
plotniche Man page Source code
predict.indicators Man page Source code
print.indicators Man page Source code
pruneindicators Man page Source code
resourceD Man page
signassoc Man page
strassoc Man page
summary.indicators Man page Source code
summary.multipatt Man page Source code
wetland Man page

Files

inst
inst/CITATION
inst/doc
inst/doc/PigeonExample.pdf
inst/doc/indicspeciesTutorial.Rnw
inst/doc/indicspeciesTutorial.R
inst/doc/indicspeciesTutorial.pdf
inst/doc/PigeonExample.Rnw
inst/doc/PigeonExample.R
NAMESPACE
data
data/pigeons.rda
data/birds.rda
data/wetland.rda
R
R/plot.indicators.r
R/indicators.r
R/combinespecies.r
R/pruneindicators.r
R/nichepref.R
R/signassoc.r
R/predict.indicators.r
R/nichedispl.R
R/strassoc.r
R/multipatt.r
R/print.indicators.r
R/nicheoverlap.R
R/plotniche.R
R/nichecentroid.R
R/summary.indicators.R
R/summary.multipatt.r
R/nichevar.R
R/coverage.r
R/plotcoverage.r
vignettes
vignettes/PigeonExample-019.pdf
vignettes/indicspeciesTutorial-030.pdf
vignettes/indicspeciesTutorial.Rnw
vignettes/indicspeciesTutorial-028.pdf
vignettes/PigeonExample-017.pdf
vignettes/indicspecies.bib
vignettes/PigeonExample-004.pdf
vignettes/PigeonExample-014.pdf
vignettes/PigeonExample-005.pdf
vignettes/resniche.bib
vignettes/PigeonExample.Rnw
vignettes/indicspeciesTutorial-029.pdf
vignettes/indicspeciesTutorial-032.pdf
vignettes/PigeonExample-015.pdf
vignettes/indicspeciesTutorial-034.pdf
vignettes/PigeonExample-013.pdf
vignettes/indicspeciesTutorial-031.pdf
vignettes/PigeonExample-018.pdf
vignettes/PigeonExample-012.pdf
vignettes/PigeonExample-010.pdf
vignettes/PigeonExample-016.pdf
vignettes/PigeonExample-011.pdf
MD5
build
build/vignette.rds
DESCRIPTION
man
man/summary.multipatt.Rd
man/nichevar.Rd
man/strassoc.Rd
man/signassoc.Rd
man/coverage.Rd
man/multipatt.Rd
man/wetland.Rd
man/pruneindicators.Rd
man/combinespecies.Rd
man/birds.Rd
man/nicheoverlap.Rd
man/plotniche.Rd
man/predict.indicators.Rd
man/pigeons.Rd
man/indicators.Rd
man/indicspecies-package.Rd
indicspecies documentation built on May 19, 2017, 10:11 a.m.

Questions? Problems? Suggestions? Tweet to @rdrrHQ or email at ian@mutexlabs.com.

Please suggest features or report bugs in the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.