intePareto: Integrative Analysis of RNA-Seq and ChIP-Seq Data

Integrative analysis of gene expression (RNA-Seq data), and histone modification data for user-defined sets of histone marks (ChIP-Seq data) to discover consistent changes in genes between biological conditions. Additionally, Pareto optimization is used to prioritize genes based on the level of consistent changes in both RNA-Seq and ChIP-Seq data. Method is described in Cao, Y. et al. (2020) <doi:10.1186/s12864-020-07205-6>.

install.packages("intePareto")

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