interval-internal: Internal functions

In interval: Weighted Logrank Tests and NPMLE for Interval Censored Data

Internal functions

Description

Functions mostly called by ictest. Not to be directly called by user.

Usage

icScoreTest(icFIT, group, scores, alternative = "two.sided", tol.svd = 10^-8)
icWSR(fit, group, scores, alternative, type, control)
wsrHLYpclt(A, p, x, group, alternative, nwsr, type, RHO)
wsrMC(A, p, x, group, alternative, nwsr, np, digits = 12)
scoresFromFit(icFIT, scores, dqfunc=NULL)
icfitBootCI(L,R,conf.level=.95,B=100,timeEpsilon=10^-8,seed=19439101,messages=TRUE,...)

Arguments

icFIT	icfit object from all the data
group	group vector, either numeric or character
scores	either 'logrank1', 'logrank2', or 'wmw'
alternative	either 'less','greater','two.sided', or 'two.sidedAbs'
tol.svd	small number, values less than that set to zero in svd
fit	icfit object from all the data
type	either 'wsr.pclt','wsr.HLY', or 'wsr.mc'
control	list passing options to function, see mControl
nwsr	number of within subject resamples
np	number of permutation replications within each wsr
digits	for ties, treat values as tied when matched to this number of digits
A	A matrix from icfit object on all data
p	pf vector from icfit object on all data
x	vector of scores associated with each value of p
dqfunc	function, density of the results of the quantile function, e.g., function(x)dnorm(qnorm(x)) (used for 'general' scores, see ictest)
L	left endpoints
R	right endpoints
conf.level	confidence level for two-sided confidence interval
B	number of bootstrap replications
timeEpsilon	small amount of time added or subtracted from times, for plotting confidence intervals
seed	numeric, if non-NULL then calls set.seed for bootstrap so it will be repeatable.

interval documentation built on Aug. 25, 2023, 1:08 a.m.