intervals
Tools for Working with Points and Intervals

Package index
Search the intervals package
Vignettes
Man pages
23
Popular Man pages
close_intervals-methods clusters-methods empty-methods expand-methods interval_complement-methods Intervals-class plot.Intervals
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Functions
104
Popular Functions
adjust_closure,Intervals_full-method adjust_closure,Intervals-method adjust_closure open_intervals,Intervals_virtual-method open_intervals close_intervals,Intervals_virtual-method close_intervals
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Source code
27
Popular Source code
R/interval_union-methods.R R/empty-methods.R R/interval_difference-methods.R R/plot.Intervals_virtual.R R/interval_intersection-methods.R R/clusters.R R/reduce-methods.R
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intervals: Tools for Working with Points and Intervals

intervals: Tools for Working with Points and Intervals
Version 0.15.1

Tools for working with and comparing sets of points and intervals.

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AuthorRichard Bourgon <bourgon.richard@gene.com>
Date of publication2015-08-27 10:30:58
MaintainerEdzer Pebesma <edzer.pebesma@uni-muenster.de>
LicenseArtistic-2.0
Version0.15.1
URL http://github.com/edzer/intervals 
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R: 
install.packages("intervals")

Getting started

Package overview
README.md

Popular man pages

close_intervals-methods: Re-represent integer intervals with open or closed endpoints
clusters-methods: Identify clusters in a collection of positions or intervals
empty-methods: Identify empty interval rows
expand-methods: Expand or contract intervals
interval_complement-methods: Compute the complement of a set of intervals
Intervals-class: Classes "Intervals" and "Intervals_full"
plot.Intervals: Plotting methods for interval objects

Man pages
as.matrix.Intervals: Extract matrix of endpoints
c.Intervals: Combine different interval matrix objects
close_intervals-methods: Re-represent integer intervals with open or closed endpoints
clusters-methods: Identify clusters in a collection of positions or intervals
distance_to_nearest-methods: Compute distance to nearest position in a set of intervals
empty-methods: Identify empty interval rows
expand-methods: Expand or contract intervals
interval_complement-methods: Compute the complement of a set of intervals
interval_difference-methods: Compute set difference
interval_included-methods: Assess inclusion of one set of intervals with respect to...
interval_intersection-methods: Compute the intersection of one or more sets of intervals
interval_overlap-methods: Assess overlap from one set of intervals to another
Intervals-class: Classes "Intervals" and "Intervals_full"
intervals-package: Tools for working with points and intervals
Intervals_virtual-class: Class "Intervals_virtual"
Intervals_virtual_or_numeric-class: Class "Intervals_virtual_or_numeric"
interval_union-methods: Compute the union of intervals in one or more interval...
plot.Intervals: Plotting methods for interval objects
reduce-methods: Compactly re-represent the points in a set of intervals
sgd: Yeast gene model sample data
size-methods: Compute interval sizes
split.Intervals_virtual: Split an intervals object according to a factor
which_nearest-methods: Identify nearest member(s) in a set of intervals

Functions
Intervals Man page Source code
Intervals-class Man page
Intervals_full Man page Source code
Intervals_full-class Man page
Intervals_virtual-class Man page
Intervals_virtual_or_numeric-class Man page
[,Intervals-method Man page
[,Intervals_full-method Man page
[<-,Intervals,ANY,missing,Intervals_virtual-method Man page
[<-,Intervals_full,ANY,missing,Intervals_virtual-method Man page
adjust Source code
adjust_closure Man page
adjust_closure,Intervals-method Man page
adjust_closure,Intervals_full-method Man page
as.matrix Man page
as.matrix,Intervals_virtual-method Man page
as.matrix.Intervals_virtual Man page Source code
c Man page
c.Intervals Man page Source code
c.Intervals_full Man page Source code
close_intervals Man page
close_intervals,Intervals_virtual-method Man page
closed Man page
closed,Intervals_virtual-method Man page Man page
closed<- Man page
closed<-,Intervals-method Man page
closed<-,Intervals_full-method Man page
clusters Man page
clusters,Intervals_virtual-method Man page
clusters,numeric-method Man page
coerce,Intervals,Intervals_full-method Man page
coerce,Intervals_full,Intervals-method Man page
coerce,Intervals_virtual,character-method Man page
contract Man page
contract,Intervals_virtual-method Man page
distance_to_nearest Man page
distance_to_nearest,Intervals_virtual_or_numeric,Intervals_virtu Man page
empty Man page
empty,Intervals-method Man page
empty,Intervals_full-method Man page
expand Man page
expand,Intervals_virtual-method Man page
head,Intervals_virtual-method Man page
initialize,Intervals-method Man page
initialize,Intervals_full-method Man page
initialize,Intervals_virtual-method Man page
interval_complement Man page
interval_complement,Intervals_virtual-method Man page
interval_difference Man page
interval_difference,Intervals_virtual,Intervals_virtual-method Man page
interval_included Man page
interval_included,Intervals,Intervals-method Man page
interval_included,Intervals_full,Intervals_full-method Man page
interval_intersection Man page
interval_intersection,Intervals_virtual-method Man page
interval_intersection,missing-method Man page
interval_overlap Man page
interval_overlap,ANY,missing-method Man page
interval_overlap,Intervals_virtual_or_numeric,Intervals_virtual_ Man page
interval_overlap,missing,ANY-method Man page
interval_union Man page
interval_union,Intervals_virtual-method Man page
interval_union,missing-method Man page
intervals Man page
intervals-package Man page
is.na,Intervals_virtual-method Man page
open_intervals Man page
open_intervals,Intervals_virtual-method Man page
plot Man page
plot,Intervals,ANY-method Man page
plot,Intervals,missing-method Man page
plot,Intervals_full,ANY-method Man page
plot,Intervals_full,missing-method Man page
plot.Intervals Man page Source code
plot.Intervals_full Man page Source code
reduce Man page
reduce,Intervals_virtual-method Man page
sgd Man page
show,Intervals_virtual-method Man page
size Man page
size,Intervals-method Man page
size,Intervals_full-method Man page
split Man page
split,Intervals_virtual-method Man page
split.Intervals_virtual Man page
t,Intervals_virtual-method Man page
tail,Intervals_virtual-method Man page
type Man page
type,Intervals_virtual-method Man page
type<- Man page
type<-,Intervals_virtual-method Man page
which_nearest Man page
which_nearest,Intervals_virtual,Intervals_virtual-method Man page
which_nearest,Intervals_virtual,numeric-method Man page
which_nearest,numeric,Intervals_virtual-method Man page
which_nearest,numeric,numeric-method Man page

Files
inst
inst/doc
inst/doc/intervals_overview.pdf
inst/doc/intervals_overview.Rnw
inst/doc/intervals_overview.R
tests
tests/intervals_test_code.R
src
src/Endpoint.cpp
src/which_nearest.cpp
src/reduce.cpp
src/plot_overlap.cpp
src/Endpoint.h
NAMESPACE
NEWS
data
data/sgd.rdata
R
R/reduce-methods.R
R/clusters.R
R/show-methods.R
R/interval_included-methods.R
R/interval_overlap-methods.R
R/interval_complement-methods.R
R/as.matrix.R
R/c.R
R/distance_to_nearest-methods.R
R/interval_intersection-methods.R
R/which_nearest-methods.R
R/head-methods.R
R/plot.Intervals_virtual.R
R/Intervals-class.R
R/expand-methods.R
R/closed-methods.R
R/interval_difference-methods.R
R/t-methods.R
R/split.R
R/empty-methods.R
R/type-methods.R
R/interval_union-methods.R
R/close_intervals-methods.R
R/size-methods.R
R/is.na-methods.R
vignettes
vignettes/intervals_overview.Rnw
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/interval_difference-methods.Rd
man/interval_union-methods.Rd
man/interval_intersection-methods.Rd
man/interval_included-methods.Rd
man/c.Intervals.Rd
man/Intervals_virtual_or_numeric-class.Rd
man/interval_complement-methods.Rd
man/intervals-package.Rd
man/as.matrix.Intervals.Rd
man/clusters-methods.Rd
man/distance_to_nearest-methods.Rd
man/sgd.Rd
man/which_nearest-methods.Rd
man/expand-methods.Rd
man/empty-methods.Rd
man/size-methods.Rd
man/reduce-methods.Rd
man/plot.Intervals.Rd
man/split.Intervals_virtual.Rd
man/Intervals-class.Rd
man/interval_overlap-methods.Rd
man/Intervals_virtual-class.Rd
man/close_intervals-methods.Rd
intervals documentation built on May 19, 2017, 11:39 p.m.

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