intervals: Tools for Working with Points and Intervals
Version 0.15.1

Tools for working with and comparing sets of points and intervals.

Browse man pages Browse package API and functions Browse package files

AuthorRichard Bourgon <bourgon.richard@gene.com>
Date of publication2015-08-27 10:30:58
MaintainerEdzer Pebesma <edzer.pebesma@uni-muenster.de>
LicenseArtistic-2.0
Version0.15.1
URL http://github.com/edzer/intervals
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("intervals")

Man pages

as.matrix.Intervals: Extract matrix of endpoints
c.Intervals: Combine different interval matrix objects
close_intervals-methods: Re-represent integer intervals with open or closed endpoints
clusters-methods: Identify clusters in a collection of positions or intervals
distance_to_nearest-methods: Compute distance to nearest position in a set of intervals
empty-methods: Identify empty interval rows
expand-methods: Expand or contract intervals
interval_complement-methods: Compute the complement of a set of intervals
interval_difference-methods: Compute set difference
interval_included-methods: Assess inclusion of one set of intervals with respect to...
interval_intersection-methods: Compute the intersection of one or more sets of intervals
interval_overlap-methods: Assess overlap from one set of intervals to another
Intervals-class: Classes "Intervals" and "Intervals_full"
intervals-package: Tools for working with points and intervals
Intervals_virtual-class: Class "Intervals_virtual"
Intervals_virtual_or_numeric-class: Class "Intervals_virtual_or_numeric"
interval_union-methods: Compute the union of intervals in one or more interval...
plot.Intervals: Plotting methods for interval objects
reduce-methods: Compactly re-represent the points in a set of intervals
sgd: Yeast gene model sample data
size-methods: Compute interval sizes
split.Intervals_virtual: Split an intervals object according to a factor
which_nearest-methods: Identify nearest member(s) in a set of intervals

Functions

Intervals Man page Source code
Intervals-class Man page
Intervals_full Man page Source code
Intervals_full-class Man page
Intervals_virtual-class Man page
Intervals_virtual_or_numeric-class Man page
[,Intervals-method Man page
[,Intervals_full-method Man page
[<-,Intervals,ANY,missing,Intervals_virtual-method Man page
[<-,Intervals_full,ANY,missing,Intervals_virtual-method Man page
adjust Source code
adjust_closure Man page
adjust_closure,Intervals-method Man page
adjust_closure,Intervals_full-method Man page
as.matrix Man page
as.matrix,Intervals_virtual-method Man page
as.matrix.Intervals_virtual Man page Source code
c Man page
c.Intervals Man page Source code
c.Intervals_full Man page Source code
close_intervals Man page
close_intervals,Intervals_virtual-method Man page
closed Man page
closed,Intervals_virtual-method Man page Man page
closed<- Man page
closed<-,Intervals-method Man page
closed<-,Intervals_full-method Man page
clusters Man page
clusters,Intervals_virtual-method Man page
clusters,numeric-method Man page
coerce,Intervals,Intervals_full-method Man page
coerce,Intervals_full,Intervals-method Man page
coerce,Intervals_virtual,character-method Man page
contract Man page
contract,Intervals_virtual-method Man page
distance_to_nearest Man page
distance_to_nearest,Intervals_virtual_or_numeric,Intervals_virtu Man page
empty Man page
empty,Intervals-method Man page
empty,Intervals_full-method Man page
expand Man page
expand,Intervals_virtual-method Man page
head,Intervals_virtual-method Man page
initialize,Intervals-method Man page
initialize,Intervals_full-method Man page
initialize,Intervals_virtual-method Man page
interval_complement Man page
interval_complement,Intervals_virtual-method Man page
interval_difference Man page
interval_difference,Intervals_virtual,Intervals_virtual-method Man page
interval_included Man page
interval_included,Intervals,Intervals-method Man page
interval_included,Intervals_full,Intervals_full-method Man page
interval_intersection Man page
interval_intersection,Intervals_virtual-method Man page
interval_intersection,missing-method Man page
interval_overlap Man page
interval_overlap,ANY,missing-method Man page
interval_overlap,Intervals_virtual_or_numeric,Intervals_virtual_ Man page
interval_overlap,missing,ANY-method Man page
interval_union Man page
interval_union,Intervals_virtual-method Man page
interval_union,missing-method Man page
intervals Man page
intervals-package Man page
is.na,Intervals_virtual-method Man page
open_intervals Man page
open_intervals,Intervals_virtual-method Man page
plot Man page
plot,Intervals,ANY-method Man page
plot,Intervals,missing-method Man page
plot,Intervals_full,ANY-method Man page
plot,Intervals_full,missing-method Man page
plot.Intervals Man page Source code
plot.Intervals_full Man page Source code
reduce Man page
reduce,Intervals_virtual-method Man page
sgd Man page
show,Intervals_virtual-method Man page
size Man page
size,Intervals-method Man page
size,Intervals_full-method Man page
split Man page
split,Intervals_virtual-method Man page
split.Intervals_virtual Man page
t,Intervals_virtual-method Man page
tail,Intervals_virtual-method Man page
type Man page
type,Intervals_virtual-method Man page
type<- Man page
type<-,Intervals_virtual-method Man page
which_nearest Man page
which_nearest,Intervals_virtual,Intervals_virtual-method Man page
which_nearest,Intervals_virtual,numeric-method Man page
which_nearest,numeric,Intervals_virtual-method Man page
which_nearest,numeric,numeric-method Man page

Files

inst
inst/doc
inst/doc/intervals_overview.pdf
inst/doc/intervals_overview.Rnw
inst/doc/intervals_overview.R
tests
tests/intervals_test_code.R
src
src/Endpoint.cpp
src/which_nearest.cpp
src/reduce.cpp
src/plot_overlap.cpp
src/Endpoint.h
NAMESPACE
NEWS
data
data/sgd.rdata
R
R/reduce-methods.R
R/clusters.R
R/show-methods.R
R/interval_included-methods.R
R/interval_overlap-methods.R
R/interval_complement-methods.R
R/as.matrix.R
R/c.R
R/distance_to_nearest-methods.R
R/interval_intersection-methods.R
R/which_nearest-methods.R
R/head-methods.R
R/plot.Intervals_virtual.R
R/Intervals-class.R
R/expand-methods.R
R/closed-methods.R
R/interval_difference-methods.R
R/t-methods.R
R/split.R
R/empty-methods.R
R/type-methods.R
R/interval_union-methods.R
R/close_intervals-methods.R
R/size-methods.R
R/is.na-methods.R
vignettes
vignettes/intervals_overview.Rnw
README.md
MD5
build
build/vignette.rds
DESCRIPTION
man
man/interval_difference-methods.Rd
man/interval_union-methods.Rd
man/interval_intersection-methods.Rd
man/interval_included-methods.Rd
man/c.Intervals.Rd
man/Intervals_virtual_or_numeric-class.Rd
man/interval_complement-methods.Rd
man/intervals-package.Rd
man/as.matrix.Intervals.Rd
man/clusters-methods.Rd
man/distance_to_nearest-methods.Rd
man/sgd.Rd
man/which_nearest-methods.Rd
man/expand-methods.Rd
man/empty-methods.Rd
man/size-methods.Rd
man/reduce-methods.Rd
man/plot.Intervals.Rd
man/split.Intervals_virtual.Rd
man/Intervals-class.Rd
man/interval_overlap-methods.Rd
man/Intervals_virtual-class.Rd
man/close_intervals-methods.Rd
intervals documentation built on May 19, 2017, 11:39 p.m.