isa2: The Iterative Signature Algorithm

Share:

The ISA is a biclustering algorithm that finds modules in an input matrix. A module or bicluster is a block of the reordered input matrix.

Author
Gabor Csardi <csardi.gabor@gmail.com>
Date of publication
2015-04-09 01:05:31
Maintainer
Gabor Csardi <csardi.gabor@gmail.com>
License
CC BY-NC-SA 4.0
Version
0.3.4
URLs

View on CRAN

Man pages

aaa-package
The isa package
generate.seeds
Generate seed vectors for the Iterative Signature Algorithm
isa
Iterative Signature Algorithm
isa.biclust
Convert ISA modules to a Biclust class, as defined by the...
isa.in.silico
Generate in-silico input data for biclustering algorithms
isa.iterate
The Iterative Signature Algorithm
isa.normalize
Normalize input data for use with ISA
isa.option
Options for the isa package
isa.sweep
Create a hierarchical structure of ISA biclusters
isa.unique
Filter out biclusters that are very similar to each other
plot.modules
Image plots of biclusters
ppa
The Ping-Pong Algorithm
ppa.in.silico
Generate in-silico input data for testing the PPA algorithm
ppa.iterate
The Ping-Pong Algorithm
ppa.normalize
Normalize input data for use with the PPA
ppa.unique
Filter co-modules that are very similar to each other
robustness
Robustness of ISA biclusters and PPA co-modules

Files in this package

isa2
isa2/inst
isa2/inst/CITATION
isa2/inst/doc
isa2/inst/doc/index.html
isa2/inst/doc/ISA_parallel.vignette
isa2/inst/doc/ISA_parallel.pdf
isa2/inst/doc/ISA_tutorial.vignette
isa2/inst/doc/ISA_tutorial.pdf
isa2/src
isa2/src/isa.c
isa2/NAMESPACE
isa2/R
isa2/R/AllGenerics.R
isa2/R/biclust.R
isa2/R/robustness.R
isa2/R/ppa.R
isa2/R/option.R
isa2/R/status.R
isa2/R/viz.R
isa2/R/insilico.R
isa2/R/isa3.R
isa2/R/zzz.R
isa2/MD5
isa2/DESCRIPTION
isa2/man
isa2/man/ppa.iterate.Rd
isa2/man/isa.biclust.Rd
isa2/man/ppa.Rd
isa2/man/plot.modules.Rd
isa2/man/isa.sweep.Rd
isa2/man/ppa.normalize.Rd
isa2/man/isa.normalize.Rd
isa2/man/isa.Rd
isa2/man/robustness.Rd
isa2/man/ppa.in.silico.Rd
isa2/man/aaa-package.Rd
isa2/man/ppa.unique.Rd
isa2/man/isa.in.silico.Rd
isa2/man/isa.unique.Rd
isa2/man/isa.iterate.Rd
isa2/man/generate.seeds.Rd
isa2/man/isa.option.Rd