Files in isotracer
Isotopic Tracer Analysis Using MCMC
configure
MD5
NEWS.md
README.md
NAMESPACE
DESCRIPTION
configure.win
R/stanmodels.R
R/ui_priors.R
R/dataset-li2017.R
R/helpers_plotting.R
R/helpers_model-building.R
R/helpers_predictions.R
R/helpers_projection-simulation.R
R/datasets_trini_mod.R
R/ui_run-mcmc.R
R/ui_getters.R
R/dataset-mcroy1970.R
R/package-doc.R
R/helpers_run-stan-euler.R
R/helpers_run-stan-matrix-exp.R
R/helpers_methods-mcmc.list.R
R/helpers_parameter-mapping.R
R/helpers_topology.R
R/ui_predictions.R
R/dataset-collins2016.R
R/ui_topology.R
R/ui_plotting-topology.R
R/ui_plotting.R
R/datasets_aquarium_mod.R
R/helpers_run-stan-common.R
R/ui_others.R
R/zzz.R
R/zzz_reexports.R
R/ui_model-building.R
R/helpers.R
R/helpers_plotting-sankey.R
R/ui_projection-simulation.R
src/Makevars
src/RcppExports.cpp
src/stanExports_networkModel.cc
src/stanExports_networkModel.h
inst/CITATION
inst/include/stan_meta_header.hpp
inst/doc/tutorial-100-posterior-predictive-checks.Rmd
inst/doc/tutorial-070-prior-predictive-checks.html
inst/doc/tutorial-120-howto-simulations.html
inst/doc/tutorial-050-fixed-effects.Rmd
inst/doc/case-study-collins-2016.Rmd
inst/doc/tutorial-130-parameter-identifiability.Rmd
inst/doc/tutorial-060-units-priors.html
inst/doc/tutorial-100-posterior-predictive-checks.html
inst/doc/tutorial-010-quick-start.html
inst/doc/tutorial-020-replication.Rmd
inst/doc/tutorial-030-steady-state-comps.Rmd
inst/doc/tutorial-120-howto-simulations.Rmd
inst/doc/tutorial-060-units-priors.Rmd
inst/doc/tutorial-040-pulse-drip-events.html
inst/doc/tutorial-110-derived-parameters.Rmd
inst/doc/tutorial-090-post-run-analyses.html
inst/doc/tutorial-040-pulse-drip-events.Rmd
inst/doc/tutorial-080-mcmc-output-format.Rmd
inst/doc/tutorial-090-post-run-analyses.Rmd
inst/doc/tutorial-080-mcmc-output-format.html
inst/doc/case-study-collins-2016.html
inst/doc/tutorial-020-replication.html
inst/doc/tutorial-030-steady-state-comps.html
inst/doc/tutorial-130-parameter-identifiability.html
inst/doc/tutorial-010-quick-start.Rmd
inst/doc/tutorial-070-prior-predictive-checks.Rmd
inst/doc/tutorial-050-fixed-effects.html
inst/doc/tutorial-110-derived-parameters.html
inst/stan/networkModel.stan
inst/stan/include/license.stan
build/vignette.rds
tests/testthat.R
tests/testthat/test-ui_projection.R
tests/testthat/test-ui_model-building.R
tests/testthat/test-ui_sankey-plotting.R
tests/testthat/test-helpers_projection-simulation.R
tests/testthat/test-todo.R
tests/testthat/test-ui_topology.R
tests/testthat/test-ui_run-mcmc.R
tests/testthat/test-ui_predictions.R
tests/testthat/test-ui_plotting.R
tests/testthat/test-ui_getters.R
tests/testthat/test-integration.R
vignettes/tutorial-100-posterior-predictive-checks.Rmd
vignettes/tutorial-050-fixed-effects.Rmd
vignettes/case-study-collins-2016.Rmd
vignettes/tutorial-130-parameter-identifiability.Rmd
vignettes/tutorial-020-replication.Rmd
vignettes/tutorial-030-steady-state-comps.Rmd
vignettes/tutorial-120-howto-simulations.Rmd
vignettes/tutorial-060-units-priors.Rmd
vignettes/tutorial-110-derived-parameters.Rmd
vignettes/tutorial-040-pulse-drip-events.Rmd
vignettes/tutorial-080-mcmc-output-format.Rmd
vignettes/tutorial-090-post-run-analyses.Rmd
vignettes/tutorial-010-quick-start.Rmd
vignettes/tutorial-070-prior-predictive-checks.Rmd
vignettes/figures/z-fig-090-unnamed-chunk-6-1.jpeg
vignettes/figures/z-fig-020-unnamed-chunk-16-1.jpeg
vignettes/figures/z-fig-cs-li-2017-unnamed-chunk-24-2.jpeg
vignettes/figures/z-fig-040-unnamed-chunk-30-1.jpeg
vignettes/figures/z-fig-130-unnamed-chunk-15-1.jpeg
vignettes/figures/z-fig-030-unnamed-chunk-26-1.jpeg
vignettes/figures/z-fig-080-unnamed-chunk-7-1.jpeg
vignettes/figures/z-fig-cs-collins-2016-unnamed-chunk-32-1.jpeg
vignettes/figures/z-fig-cs-li-2017-unnamed-chunk-21-1.jpeg
vignettes/figures/z-fig-120-unnamed-chunk-21-1.jpeg
vignettes/figures/z-fig-120-unnamed-chunk-29-2.jpeg
vignettes/figures/z-fig-100-unnamed-chunk-11-1.jpeg
vignettes/figures/z-fig-050-unnamed-chunk-22-1.jpeg
vignettes/figures/z-fig-080-unnamed-chunk-11-1.jpeg
vignettes/figures/z-fig-030-unnamed-chunk-25-1.jpeg
vignettes/figures/z-fig-100-unnamed-chunk-5-1.jpeg
vignettes/figures/z-fig-010-unnamed-chunk-21-1.jpeg
vignettes/figures/z-fig-110-unnamed-chunk-11-1.jpeg
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vignettes/figures/z-fig-050-unnamed-chunk-4-1.jpeg
vignettes/figures/z-fig-120-unnamed-chunk-13-1.jpeg
vignettes/figures/z-fig-080-unnamed-chunk-12-1.jpeg
vignettes/figures/z-fig-120-unnamed-chunk-11-1.jpeg
vignettes/figures/z-fig-cs-mcroy-1970-unnamed-chunk-32-1.jpeg
vignettes/figures/z-fig-050-unnamed-chunk-25-1.jpeg
vignettes/figures/z-fig-030-generate-data-1.jpeg
vignettes/figures/z-fig-110-unnamed-chunk-6-1.jpeg
vignettes/figures/z-fig-020-unnamed-chunk-19-1.jpeg
vignettes/figures/z-fig-040-unnamed-chunk-15-1.jpeg
vignettes/figures/z-fig-090-unnamed-chunk-21-1.jpeg
vignettes/figures/z-fig-110-unnamed-chunk-13-1.jpeg
vignettes/figures/z-fig-040-unnamed-chunk-17-1.jpeg
vignettes/figures/z-fig-020-unnamed-chunk-4-1.jpeg
vignettes/figures/z-fig-cs-li-2017-unnamed-chunk-6-1.jpeg
vignettes/figures/z-fig-050-unnamed-chunk-27-1.jpeg
vignettes/figures/z-fig-cs-collins-2016-unnamed-chunk-29-1.jpeg
vignettes/figures/z-fig-130-unnamed-chunk-22-1.jpeg
vignettes/figures/z-fig-010-plot-data-1.jpeg
vignettes/figures/z-fig-cs-collins-2016-unnamed-chunk-37-1.jpeg
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vignettes/figures/z-fig-100-unnamed-chunk-12-1.jpeg
vignettes/figures/z-fig-030-generate-data-2.jpeg
vignettes/figures/z-fig-120-unnamed-chunk-29-1.jpeg
vignettes/figures/z-fig-040-unnamed-chunk-28-1.jpeg
vignettes/figures/z-fig-130-unnamed-chunk-16-1.jpeg
vignettes/figures/z-fig-120-unnamed-chunk-25-1.jpeg
vignettes/figures/z-fig-090-unnamed-chunk-10-1.jpeg
vignettes/figures/z-fig-cs-mcroy-1970-unnamed-chunk-21-1.jpeg
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vignettes/figures/z-fig-040-unnamed-chunk-4-1.jpeg
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vignettes/figures/z-fig-130-unnamed-chunk-12-1.jpeg
vignettes/figures/z-fig-080-unnamed-chunk-16-1.jpeg
vignettes/figures/z-fig-cs-li-2017-unnamed-chunk-25-1.jpeg
vignettes/figures/z-fig-030-unnamed-chunk-4-1.jpeg
vignettes/figures/z-fig-120-unnamed-chunk-27-1.jpeg
vignettes/figures/z-fig-110-unnamed-chunk-7-1.jpeg
vignettes/figures/z-fig-100-unnamed-chunk-7-1.jpeg
vignettes/figures/z-fig-cs-li-2017-unnamed-chunk-26-1.jpeg
vignettes/figures/z-fig-cs-li-2017-unnamed-chunk-29-1.jpeg
vignettes/figures/z-fig-cs-collins-2016-unnamed-chunk-11-1.jpeg
vignettes/figures/z-fig-cs-collins-2016-unnamed-chunk-40-1.jpeg
vignettes/figures/z-fig-cs-mcroy-1970-unnamed-chunk-8-1.jpeg
vignettes/figures/z-fig-130-unnamed-chunk-10-1.jpeg
vignettes/figures/z-fig-130-unnamed-chunk-20-1.jpeg
vignettes/figures/z-fig-050-unnamed-chunk-24-1.jpeg
vignettes/figures/z-fig-010-unnamed-chunk-18-1.jpeg
vignettes/figures/z-fig-cs-li-2017-unnamed-chunk-24-1.jpeg
vignettes/figures/z-fig-010-unnamed-chunk-8-1.jpeg
vignettes/figures/z-fig-cs-collins-2016-unnamed-chunk-46-1.jpeg
vignettes/figures/z-fig-130-unnamed-chunk-18-1.jpeg
vignettes/figures/z-fig-040-unnamed-chunk-13-1.jpeg
vignettes/figures/z-fig-050-unnamed-chunk-20-1.jpeg
vignettes/figures/z-fig-120-unnamed-chunk-15-1.jpeg
vignettes/figures/z-fig-100-unnamed-chunk-13-1.jpeg
vignettes/figures/z-fig-090-unnamed-chunk-15-1.jpeg
vignettes/figures/z-fig-cs-mcroy-1970-unnamed-chunk-20-1.jpeg
data/aquarium_run.rda
data/lalaja.rda
data/trini_mod.rda
data/li2017_prots.rda
data/aquarium_mod.rda
data/li2017.rda
data/li2017_counts.rda
data/eelgrass.rda
man/pillar_shaft.prior.Rd
man/calculate_steady_state.Rd
man/filter_by_group.Rd
man/set_half_life.Rd
man/normal_p.Rd
man/print.prior.Rd
man/ggflows.Rd
man/set_params.Rd
man/tidy_flows.Rd
man/ggtopo.topology.Rd
man/reexports.Rd
man/tidy_data.Rd
man/eelgrass.Rd
man/aquarium_mod.Rd
man/print.prior_tibble.Rd
man/sample_from.Rd
man/aquarium_run.Rd
man/add_covariates.Rd
man/constant_p.Rd
man/exponential_p.Rd
man/plot.ready_for_unit_plot.Rd
man/ggtopo.Rd
man/comps.Rd
man/tidy_steady_states.Rd
man/scaled_beta_p.Rd
man/filter.ppcNetworkModel.Rd
man/mcmc_heatmap.Rd
man/lalaja.Rd
man/run_mcmc.Rd
man/priors.Rd
man/set_obs.Rd
man/Ops.prior.Rd
man/select.mcmc.list.Rd
man/sample_from_prior.Rd
man/format.prior.Rd
man/add_pulse_event.Rd
man/tidy_trajectories.Rd
man/obj_sum.prior.Rd
man/isotracer-package.Rd
man/sankey.Rd
man/tidy_dpp.Rd
man/available_priors.Rd
man/as.mcmc.list.tidy_steady_states.Rd
man/tidy_mcmc.Rd
man/prop_family.Rd
man/sample_params.Rd
man/plot.networkModel.Rd
man/Ops.mcmc.list.Rd
man/new_networkModel.Rd
man/traceplot.Rd
man/set_steady.Rd
man/as_tbl_graph.Rd
man/set_split.Rd
man/delta2prop.Rd
man/set_topo.Rd
man/print.topology.Rd
man/gamma_p.Rd
man/Ops.topology.Rd
man/project.Rd
man/hcauchy_p.Rd
man/predict.networkModel.Rd
man/groups.networkModel.Rd
man/c.mcmc.list.Rd
man/dic.Rd
man/li2017.Rd
man/sub-.networkModelStanfit.Rd
man/posterior_predict.networkModelStanfit.Rd
man/format.prior_tibble.Rd
man/stanfit_to_named_mcmclist.Rd
man/Math.mcmc.list.Rd
man/set_prop_family.Rd
man/type_sum.prior.Rd
man/topo.Rd
man/filter.Rd
man/set_prior.Rd
man/trini_mod.Rd
man/size_family.Rd
man/quick_sankey.Rd
man/print.networkModel.Rd
man/tidy_posterior_predict.Rd
man/missing_priors.Rd
man/posterior_predict.Rd
man/set_init.Rd
man/as.mcmc.list.tidy_flows.Rd
man/params.Rd
man/uniform_p.Rd
man/as_tbl_graph.topology.Rd
man/ggtopo.networkModel.Rd
man/set_size_family.Rd
man/figures/hexsticker_isotracer_dark.png
man/figures/hexsticker_isotracer.svg
man/figures/hexsticker_isotracer_dark.svg
