Man pages for jackalope
A Swift, Versatile Phylogenomic and High-Throughput Sequencing Simulator
| create_genome | Create a reference genome. |
| create_haplotypes | Create haplotypes from a reference genome. |
| evo_rates | Table of evolutionary rates. |
| haplotypes | An R6 Class Representing Haploid Variants |
| haps_functions | Organize higher-level information for creating haplotypes. |
| haps_gtrees | Organize information to create haplotypes using gene trees |
| haps_phylo | Organize information to create haplotypes using phylogenetic... |
| haps_ssites | Organize information to create haplotypes using segregating... |
| haps_theta | Organize information to create haplotypes using theta... |
| haps_vcf | Organize information to create haplotypes using a VCF file |
| illumina | Create and write Illumina reads to FASTQ file(s). |
| indels | Insertions and deletions (indels) specification |
| jackalope-package | jackalope: A Swift, Versatile Phylogenomic and... |
| pacbio | Create and write PacBio reads to FASTQ file(s). |
| read_fasta | Read a fasta file. |
| ref_genome | R6 Class Representing a Reference Genome |
| sub_models | Construct necessary information for substitution models. |
| write_fasta | Write a 'ref_genome' or 'haplotypes' object to a FASTA file. |
| write_vcf | Write haplotype info from a 'haplotypes' object to a VCF... |
