Files in jackalope
A Swift, Versatile Phylogenomic and High-Throughput Sequencing Simulator

MD5
LICENSE
DESCRIPTION
README.md
NAMESPACE
inst/CITATION
inst/doc/sub-models.R inst/doc/jackalope-intro.R
inst/doc/jackalope-intro.html
inst/doc/sub-models.html
inst/doc/jackalope-intro.Rmd inst/doc/sub-models.Rmd
inst/include/pcg/pcg_extras.hpp
inst/include/pcg/pcg_random.hpp
inst/include/pcg/pcg_uint128.hpp
inst/art_profiles/HiSeqXPCRfreeL150R1.txt.gz
inst/art_profiles/MiSeqv3L250R2.txt.gz
inst/art_profiles/EmpR36R2.txt.gz
inst/art_profiles/HiSeq2500L150R2filter.txt.gz
inst/art_profiles/EmpR50R1.txt.gz
inst/art_profiles/EmpR75R2.txt.gz
inst/art_profiles/MiniSeqTruSeqL50.txt.gz
inst/art_profiles/Emp100R1.txt.gz
inst/art_profiles/HiSeq2000L100R2.txt.gz
inst/art_profiles/HiSeqXtruSeqL150R2.txt.gz
inst/art_profiles/NextSeq500v2L75R1.txt.gz
inst/art_profiles/HiSeq2500L125R1.txt.gz
inst/art_profiles/EmpMiSeq250R1.txt.gz
inst/art_profiles/EmpR75R1.txt.gz
inst/art_profiles/HiSeq2000L100R1.txt.gz
inst/art_profiles/HiSeq2500L150R1filter.txt.gz
inst/art_profiles/HiSeqXtruSeqL150R1.txt.gz
inst/art_profiles/EmpR50R2.txt.gz
inst/art_profiles/EmpR36R1.txt.gz
inst/art_profiles/EmpR44R1.txt.gz
inst/art_profiles/MiSeqv3L250R1.txt.gz
inst/art_profiles/Emp100R2.txt.gz
inst/art_profiles/EmpR44R2.txt.gz
inst/art_profiles/HiSeqXPCRfreeL150R2.txt.gz
inst/art_profiles/EmpMiSeq250R2.txt.gz
inst/art_profiles/HiSeq2500L125R2.txt.gz
inst/art_profiles/NextSeq500v2L75R2.txt.gz
vignettes/jackalope-intro.Rmd vignettes/sub-models.Rmd R/create_genome.R R/aaa-classes.R R/data.R R/read_write.R R/util.R R/jackalope.R R/RcppExports.R R/hts_pacbio.R R/mevo.R R/hts_illumina.R R/create_variants.R R/vars_functions.R
src/pcg.h
src/io_ms.cpp
src/seq_classes_ref.h
src/phylogenomics.cpp
src/io.h
src/util.h
src/mutator.cpp
src/hts_pacbio.h
src/util.cpp
src/jackalope_types.h
src/mutator_type.h
src/Makevars.win
src/mutator_location.h
src/alter_reference.cpp
src/mutator.h
src/alias_sampler.h
src/site_var.cpp
src/RcppExports.cpp
src/create_sequences.cpp
src/hts_illumina.h
src/vars_ssites.cpp
src/io_vcf.h
src/io_fasta.cpp
src/io_bed.cpp
src/sub_models.cpp
src/hts.h
src/str_manip.h
src/mutator_location.cpp
src/seq_classes_var.h
src/Makevars
src/io_vcf.cpp
src/hts_pacbio.cpp
src/phylogenomics.h
src/seq_classes_var.cpp
src/seq_classes_access.cpp
src/hts_illumina.cpp
man/variants.Rd man/vars_phylo.Rd man/sub_models.Rd man/vars_gtrees.Rd man/site_var.Rd man/vars_ssites.Rd man/jackalope.Rd man/illumina.Rd man/vars_vcf.Rd man/pacbio.Rd man/vars_theta.Rd man/read_fasta.Rd man/write_fasta.Rd man/create_variants.Rd man/indels.Rd man/write_vcf.Rd man/vars_functions.Rd man/create_genome.Rd man/ref_genome.Rd man/evo_rates.Rd
man/figures/logo.png
build/vignette.rds
tests/testthat.R tests/testthat/test-create_mevo.R tests/testthat/test-fasta_IO.R tests/testthat/test-variants_other.R tests/testthat/test-vcf_IO.R tests/testthat/test-misc.R tests/testthat/test-variants_coal.R tests/testthat/test-sequencer.R tests/testthat/test-R_classes.R
tests/testthat/files/ms_out_err3.txt
tests/testthat/files/ms_out_err2.txt
tests/testthat/files/ms_out_err1.txt
tests/testthat/files/ms_out.txt
data/evo_rates.rda
jackalope documentation built on Oct. 30, 2019, 11:47 a.m.