read_fasta: Read a fasta file.
In jackalope: A Swift, Versatile Phylogenomic and High-Throughput Sequencing Simulator
read_fasta R Documentation
Read a fasta file.
Description
Accepts uncompressed and gzipped fasta files.
Usage
read_fasta(fasta_files, fai_files = NULL, cut_names = FALSE)
Arguments
fasta_files
File name(s) of the fasta file(s).
fai_files
File name(s) of the fasta index file(s).
Providing this argument speeds up the reading process significantly.
If this argument is provided, it must be the same length as the fasta_files
argument.
Defaults to NULL, which indicates the fasta file(s) is/are not indexed.
cut_names
Boolean for whether to cut chromosome names at the first space.
This argument is ignored if fai_file is not NULL.
Defaults to FALSE.
Value
A ref_genome object.
jackalope documentation built on May 29, 2024, 3:58 a.m.
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| read_fasta | R Documentation |
Read a fasta file.
Description
Accepts uncompressed and gzipped fasta files.
Usage
read_fasta(fasta_files, fai_files = NULL, cut_names = FALSE)
Arguments
fasta_files |
File name(s) of the fasta file(s). |
fai_files |
File name(s) of the fasta index file(s).
Providing this argument speeds up the reading process significantly.
If this argument is provided, it must be the same length as the |
cut_names |
Boolean for whether to cut chromosome names at the first space.
This argument is ignored if |
Value
A ref_genome object.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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