jackstraw: Statistical Inference of Variables Driving Systematic Variation

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Significance test for association between variables and their estimated latent variables. Latent variables may be estimated by principal component analysis (PCA), logistic factor analysis (LFA), and other techniques.

Author
Neo Christopher Chung <nchchung@gmail.com>, Wei Hao <whao@princeton.edu>, John D. Storey <jstorey@princeton.edu>
Date of publication
2015-12-29 22:31:14
Maintainer
Neo Christopher Chung <nchchung@gmail.com>
License
GPL-2
Version
1.1

View on CRAN

Man pages

devdiff
Difference in Deviances
devdiff_parallel
Difference in Deviances, in Parallel
dev.R
Compute Deviance for Logistic Factors
efron_Rsq
Efron's Pseudo R-sqaured
jackstraw
Non-Parametric Jackstraw (Wrapper)
jackstraw.FUN
Non-Parametric Jackstraw for a Custom Function
jackstraw.LFA
Non-Parametric Jackstraw for Logistic Factor Analysis
jackstraw.parametric
Parametric Jackstraw
jackstraw.PCA
Non-Parametric Jackstraw for Principal Component Analysis...
lfa.corpcor
Logistic Factor Analysis without C++ Dependency
permutationPA
Permutation Parallel Analysis
pseudo_Rsq
Mcfadden's Pseudo R-sqaured

Files in this package

jackstraw
jackstraw/NAMESPACE
jackstraw/R
jackstraw/R/generic.R
jackstraw/R/permutationPA.R
jackstraw/R/jackstraw_parametric.R
jackstraw/R/likelihood.R
jackstraw/R/lfacorpcor.R
jackstraw/R/jackstraw.R
jackstraw/vignettes
jackstraw/vignettes/refs.bib
jackstraw/vignettes/fixed
jackstraw/vignettes/fixed/LatentVariableModel.png
jackstraw/vignettes/jackstraw.Rnw
jackstraw/vignettes/jackstraw.pdf
jackstraw/MD5
jackstraw/DESCRIPTION
jackstraw/man
jackstraw/man/jackstraw.FUN.Rd
jackstraw/man/pseudo_Rsq.Rd
jackstraw/man/permutationPA.Rd
jackstraw/man/devdiff.Rd
jackstraw/man/efron_Rsq.Rd
jackstraw/man/jackstraw.parametric.Rd
jackstraw/man/jackstraw.LFA.Rd
jackstraw/man/jackstraw.PCA.Rd
jackstraw/man/lfa.corpcor.Rd
jackstraw/man/dev.R.Rd
jackstraw/man/devdiff_parallel.Rd
jackstraw/man/jackstraw.Rd