jackstraw: Statistical Inference of Variables Driving Systematic Variation
Version 1.1

Significance test for association between variables and their estimated latent variables. Latent variables may be estimated by principal component analysis (PCA), logistic factor analysis (LFA), and other techniques.

AuthorNeo Christopher Chung <nchchung@gmail.com>, Wei Hao <whao@princeton.edu>, John D. Storey <jstorey@princeton.edu>
Date of publication2015-12-29 22:31:14
MaintainerNeo Christopher Chung <nchchung@gmail.com>
LicenseGPL-2
Version1.1
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("jackstraw")

Popular man pages

devdiff: Difference in Deviances
dev.R: Compute Deviance for Logistic Factors
jackstraw: Non-Parametric Jackstraw (Wrapper)
jackstraw.FUN: Non-Parametric Jackstraw for a Custom Function
jackstraw.LFA: Non-Parametric Jackstraw for Logistic Factor Analysis
permutationPA: Permutation Parallel Analysis
pseudo_Rsq: Mcfadden's Pseudo R-sqaured
See all...

All man pages Function index File listing

Man pages

devdiff: Difference in Deviances
devdiff_parallel: Difference in Deviances, in Parallel
dev.R: Compute Deviance for Logistic Factors
efron_Rsq: Efron's Pseudo R-sqaured
jackstraw: Non-Parametric Jackstraw (Wrapper)
jackstraw.FUN: Non-Parametric Jackstraw for a Custom Function
jackstraw.LFA: Non-Parametric Jackstraw for Logistic Factor Analysis
jackstraw.parametric: Parametric Jackstraw
jackstraw.PCA: Non-Parametric Jackstraw for Principal Component Analysis...
lfa.corpcor: Logistic Factor Analysis without C++ Dependency
permutationPA: Permutation Parallel Analysis
pseudo_Rsq: Mcfadden's Pseudo R-sqaured

Functions

FSTAT Source code
RSS Source code
dev.R Man page Source code
devdiff Man page Source code
devdiff_parallel Man page Source code
devdiff_snp Source code
efron_Rsq Man page Source code
efron_Rsq_snp Source code
getp Source code
jackstraw Man page Source code
jackstraw.FUN Man page Source code
jackstraw.LFA Man page Source code
jackstraw.PCA Man page Source code
jackstraw.parametric Man page Source code
lfa.corpcor Man page Source code
mcfadden_Rsq_snp Source code
permutationPA Man page Source code
pseudo_Rsq Man page Source code

Files

NAMESPACE
R
R/generic.R
R/permutationPA.R
R/jackstraw_parametric.R
R/likelihood.R
R/lfacorpcor.R
R/jackstraw.R
vignettes
vignettes/refs.bib
vignettes/fixed
vignettes/fixed/LatentVariableModel.png
vignettes/jackstraw.Rnw
vignettes/jackstraw.pdf
MD5
DESCRIPTION
man
man/jackstraw.FUN.Rd
man/pseudo_Rsq.Rd
man/permutationPA.Rd
man/devdiff.Rd
man/efron_Rsq.Rd
man/jackstraw.parametric.Rd
man/jackstraw.LFA.Rd
man/jackstraw.PCA.Rd
man/lfa.corpcor.Rd
man/dev.R.Rd
man/devdiff_parallel.Rd
man/jackstraw.Rd
jackstraw documentation built on May 19, 2017, 9:21 p.m.

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