tar_jags_run: Run a JAGS model and return the whole output object.
In jagstargets: Targets for JAGS Pipelines

tar_jags_run

R Documentation

Run a JAGS model and return the whole output object.

Description

Not a user-side function. Do not invoke directly.

Usage

tar_jags_run(
  jags_lines,
  parameters.to.save,
  data,
  inits,
  n.cluster,
  n.chains,
  n.iter,
  n.burnin,
  n.thin,
  jags.module,
  RNGname,
  jags.seed,
  stdout,
  stderr,
  progress.bar,
  refresh
)

Arguments

`jags_lines`	Character vector of lines from a JAGS model file.
`parameters.to.save`	Model parameters to save, passed to `R2jags::jags()` or `R2jags::jags.parallel()`. See the argument documentation of the `R2jags::jags()` and `R2jags::jags.parallel()` help files for details.
`inits`	Initial values of model parameters, passed to `R2jags::jags()` or `R2jags::jags.parallel()`. See the argument documentation of the `R2jags::jags()` and `R2jags::jags.parallel()` help files for details.
`n.cluster`	Number of parallel processes, passed to `R2jags::jags()` or `R2jags::jags.parallel()`. See the argument documentation of the `R2jags::jags()` and `R2jags::jags.parallel()` help files for details.
`n.chains`	Number of MCMC chains, passed to `R2jags::jags()` or `R2jags::jags.parallel()`. See the argument documentation of the `R2jags::jags()` and `R2jags::jags.parallel()` help files for details.
`n.iter`	Number if iterations (including warmup), passed to `R2jags::jags()` or `R2jags::jags.parallel()`. See the argument documentation of the `R2jags::jags()` and `R2jags::jags.parallel()` help files for details.
`n.burnin`	Number of warmup iterations, passed to `R2jags::jags()` or `R2jags::jags.parallel()`. See the argument documentation of the `R2jags::jags()` and `R2jags::jags.parallel()` help files for details.
`n.thin`	Thinning interval, passed to `R2jags::jags()` or `R2jags::jags.parallel()`. See the argument documentation of the `R2jags::jags()` and `R2jags::jags.parallel()` help files for details.
`jags.module`	Character vector of JAGS modules to load, passed to `R2jags::jags()` or `R2jags::jags.parallel()`. See the argument documentation of the `R2jags::jags()` and `R2jags::jags.parallel()` help files for details.
`RNGname`	Choice of random number generator, passed to `R2jags::jags()` or `R2jags::jags.parallel()`. See the argument documentation of the `R2jags::jags()` and `R2jags::jags.parallel()` help files for details.
`jags.seed`	Seeds to apply to JAGS, passed to `R2jags::jags()` or `R2jags::jags.parallel()`. See the argument documentation of the `R2jags::jags()` and `R2jags::jags.parallel()` help files for details.
`stdout`	Character of length 1, file path to write the stdout stream of the model when it runs. Set to `NULL` to print to the console. Set to `R.utils::nullfile()` to suppress stdout. Does not apply to messages, warnings, or errors.
`stderr`	Character of length 1, file path to write the stderr stream of the model when it runs. Set to `NULL` to print to the console. Set to `R.utils::nullfile()` to suppress stderr. Does not apply to messages, warnings, or errors.
`progress.bar`	Type of progress bar, passed to `R2jags::jags()` or `R2jags::jags.parallel()`. See the argument documentation of the `R2jags::jags()` and `R2jags::jags.parallel()` help files for details.
`refresh`	Frequency for refreshing the progress bar, passed to `R2jags::jags()` or `R2jags::jags.parallel()`. See the argument documentation of the `R2jags::jags()` and `R2jags::jags.parallel()` help files for details.