kobe: Tools for the provision of scientific fisheries management advice

The tuna Regional Fisheries Management Organisations (tRFMOs) use a common framework for providing scientific advice, i.e. the Kobe II Framework. This is based on maintaining fishing mortality below FMSY and stock biomass above BMSY. This package provides methods for summarising results from stock assessments and Management Strategy Evaluations in the Kobe format.

Author
Laurence Kell
Date of publication
2014-06-07 21:15:38
Maintainer
Laurence Kell <laurie.kell@iccat.int>
License
GPL (>= 2)
Version
1.3.2

View on CRAN

Man pages

dRate
dRate
ggplotFL-multiplot
Calculates confidence intervals for different probabiity...
hinge
incr
iav
iav
incr
incr
kobe2box
Reads pro2box projection results and returns stock and...
kobeAspic
Reads ASPIC bootstraps and projections and returns stock and...
kobe-Data
Example Datasets
kobeDens
kobeDens
kobeFreq
kobeFreq
kobeInterp
Methods to generate the Kobe II Strategy Matrix.
kobe-methods
~~ Methods for Function 'kobe' in Package 'kobe' ~~
kobeMFCL
Reads Multifan-CL assessment results and returns stock and...
kobeP
Calculates whether each point corresponds to being...
kobe-package
Tools for provide scientific fisheries advice
kobePhaseMar-method
Kobe Phase Plot with Marginal Densities
kobePhase-method
kobePhase
kobeProb
kobeProb
kobeShade
Shades matrix depending on value of elements
kobeSmry-method
Creates Summaries i.e. probability of being in the green...
kobeSS
Reads SS assessment results and returns stock and harvest...
kobeSS3
Reads SS3 results and returns stock and harvest rate relative...
kobeTrks-method
Creates tracks for plotting on phase plot
recovered
recovered
theme_ms
ggplot2 theme

Files in this package

kobe
kobe/inst
kobe/inst/bits
kobe/inst/bits/covEllipse.R
kobe/inst/doc
kobe/inst/doc/kobe.R
kobe/inst/doc/kobe.Rnw
kobe/inst/doc/kobe.pdf
kobe/NAMESPACE
kobe/data
kobe/data/prj.RData
kobe/data/prj1.RData
kobe/data/assmt.RData
kobe/data/datalist
kobe/data/sims.RData
kobe/R
kobe/R/ggplotFL-theme.R
kobe/R/kobeTrks.R
kobe/R/kobe-generics.R
kobe/R/kobe-MFCL.R
kobe/R/kobe-funcs.R
kobe/R/kobe-bsp.R
kobe/R/kobeP.R
kobe/R/kobe-aspic.R
kobe/R/kobeSmry.R
kobe/R/kobe-ss.R
kobe/R/kobe-read-methods.R
kobe/R/kobePhase.R
kobe/R/kobeShade.R
kobe/R/ggplotFL-multiplot.R
kobe/R/kobe-ss3.R
kobe/R/kobe-SAM.R
kobe/R/kobeInterp.R
kobe/R/kobePhaseMar.R
kobe/R/kobe-2box.R
kobe/vignettes
kobe/vignettes/kobe.Rnw
kobe/MD5
kobe/build
kobe/build/vignette.rds
kobe/DESCRIPTION
kobe/man
kobe/man/kobeAspic.Rd
kobe/man/kobeSS3.Rd
kobe/man/theme_ms.Rd
kobe/man/ggplotFL-multiplot.Rd
kobe/man/iav.Rd
kobe/man/kobePhase-method.Rd
kobe/man/kobeSS.Rd
kobe/man/kobeSmry-method.Rd
kobe/man/kobe2box.Rd
kobe/man/hinge.Rd
kobe/man/incr.Rd
kobe/man/dRate.Rd
kobe/man/recovered.Rd
kobe/man/kobeInterp.Rd
kobe/man/kobe-Data.Rd
kobe/man/kobe-methods.Rd
kobe/man/kobeFreq.Rd
kobe/man/kobeTrks-method.Rd
kobe/man/kobePhaseMar-method.Rd
kobe/man/kobeShade.Rd
kobe/man/kobe-package.Rd
kobe/man/kobeProb.Rd
kobe/man/kobeP.Rd
kobe/man/kobeDens.Rd
kobe/man/kobeMFCL.Rd