kobe-package: Tools for provide scientific fisheries advice
In kobe: Tools for the provision of scientific fisheries management advice

Description Details Author(s) References

The tuna Regional Fisheries Management Organisations (tRFMOs) use a common framework for providing scintific advice, i.e. the Kobe II Framework. This is based on maintaining fishing mortality below FMSY and stock biomass above BMSY. This package provides methods for summarising results from stock assessments and Management Strategy Evaluations in the Kobe format.

Package:	kobe
Type:	Package
Version:	1.0
Date:	2012-06-22
License:	GPL-2
Depends:	methods, ggplot2, reshape, plyr, grid, MASS, coda, emdbook, tables
Collate:	kobe-generics.R kobe-funcs.R kobe-methods.R kobe-aspic.R kobe-2box.R kobe-ss.R kobe-MFCL.R multiplot.R kobe-Phase.R kobe-k2sm-ggplot2.R kobe-themes.R
Built:	R 2.15.1; ; 2012-10-11 17:37:36 UTC; unix

Index:

kobe-package            Provides tools for plotting advice in the tRFMO format
kobe2box                Reads pro2box projection results and returns
                        stock and harvest rate relative to BMSY and
                        FMSY
kobe2sm                 Calculates confidence intervals for different
                        probabiity levels for pairs of data points.
kobeAspic               Reads ASPIC bootstrap and projections outputs
                        and returns stock and harvest rate relative to
                        BMSY and FMSY
kobeMFCL                Reads Multifan-CL assessment results and
                        returns stock and harvest rate relative to BMSY
                        and FMSY
kobeP                   Calculates the probability of being over-fished
                        or subject to over-fishing and being in one of
                        the kobe phase plots quadrants.
kobePhase               Calculates confidence intervals for different
                        Phaseabiity levels for pairs of data points.
kobePhaseMar            Calculates confidence intervals for different
                        Phaseabiity levels for pairs of data points.
kobeProb                Calculates confidence intervals for different
                        probabiity levels for pairs of data points.
kobeSS                  Reads SS assessment results and returns stock
                        and harvest rate relative to BMSY and FMSY
kobeShade               Calculates confidence intervals for different
                        probabiity levels for pairs of data points.
kobeTrks                Calculates confidence intervals for different
                        Trksabiity levels for pairs of data points.
multiplot               Calculates confidence intervals for different
                        probabiity levels for pairs of data points.
sims                    kobe datasets