ksrlive: Identify Kinase Substrate Relationships Using Dynamic Data
Version 1.0

Using this package you can combine known kinase substrate relationships with experimental data and determine active kinases and their substrates.

Browse man pages Browse package API and functions Browse package files

AuthorWesta Domanova
Date of publication2015-10-19 08:41:56
MaintainerWesta Domanova <w.domanova@gmail.com>
LicenseGPL-2 | GPL-3
Version1.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ksrlive")

Man pages

clustering: Return clustering assignments produced by tight.clust
clust.expand: Find clusters containing core substrates
data_kin: Time course data for phosphorylation sites
KSR.list: Create a kinase substrate relationship list from a data frame
ksrlive: Identify site specific kinase substrate relationships using...
phosphonetwork_df: site specific kinase substrate relationship dataset
random.data: Create random data

Functions

KSR.list Man page Source code
clust.expand Man page Source code
clustering Man page Source code
data_kin Man page
ksrlive Man page
ksrlive-package Man page
phosphonetwork_df Man page
random.data Man page Source code

Files

NAMESPACE
data
data/phosphonetworkdf.RData
data/datalist
data/datakin.RData
R
R/ksrlive-internal.R
R/ksrlive.R
MD5
DESCRIPTION
man
man/ksrlive.Rd
man/clust.expand.Rd
man/KSR.list.Rd
man/clustering.Rd
man/data_kin.Rd
man/random.data.Rd
man/phosphonetwork_df.Rd
ksrlive documentation built on May 19, 2017, 11:37 p.m.