ksrlive: Identify Kinase Substrate Relationships Using Dynamic Data

Share:

Using this package you can combine known kinase substrate relationships with experimental data and determine active kinases and their substrates.

Author
Westa Domanova
Date of publication
2015-10-19 08:41:56
Maintainer
Westa Domanova <w.domanova@gmail.com>
License
GPL-2 | GPL-3
Version
1.0

View on CRAN

Man pages

clustering
Return clustering assignments produced by tight.clust
clust.expand
Find clusters containing core substrates
data_kin
Time course data for phosphorylation sites
KSR.list
Create a kinase substrate relationship list from a data frame
ksrlive
Identify site specific kinase substrate relationships using...
phosphonetwork_df
site specific kinase substrate relationship dataset
random.data
Create random data

Files in this package

ksrlive
ksrlive/NAMESPACE
ksrlive/data
ksrlive/data/phosphonetworkdf.RData
ksrlive/data/datalist
ksrlive/data/datakin.RData
ksrlive/R
ksrlive/R/ksrlive-internal.R
ksrlive/R/ksrlive.R
ksrlive/MD5
ksrlive/DESCRIPTION
ksrlive/man
ksrlive/man/ksrlive.Rd
ksrlive/man/clust.expand.Rd
ksrlive/man/KSR.list.Rd
ksrlive/man/clustering.Rd
ksrlive/man/data_kin.Rd
ksrlive/man/random.data.Rd
ksrlive/man/phosphonetwork_df.Rd