This dataset contains all site specific kinase relationships from PhosphoSitePlus, PhosphoElm, HPRD and PhosphoPoint.
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1 2 3 4 5 6 7 8 9 10 11 12 13 14 15 16 17 18 19 20 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 | 'data.frame': 13505 obs. of 34 variables:
$ SUB_ACC_ID : chr "A1KXE4" "A1X283" "A2A9C3" "A2APB8" ...
$ MODSITE_SEQ : chr "QTGYTPGTPYKVSCS" "DMSASAGYEEISDPD" "TPGSLVGSPREASGM" "KIARDPQTPILQTKY" ...
$ KIN_ACC_ID : chr "P24941" "P12931" "Q9JLN9" "P63085" ...
$ ORG : Factor w/ 17 levels "chicken","cow",..: 8 8 10 10 10 8 8 10 8 8 ...
$ KINASE : chr "CDK2" "SRC" "MTOR" "ERK2" ...
$ KIN_GENE_SYMB : chr "CDK2" "SRC" "MTOR" "MAPK1" ...
$ HU_CHR_LOC : Factor w/ 274 levels "","10p11.1","10p11.23",..: 27 132 1 1 1 7 215 1 173 13 ...
$ SUBSTRATE : chr "FAM168B" "SH3PXD2B" "SZT2" "TPX2" ...
$ SUB_GENE_ID : chr "130074" "285590" "230676" "72119" ...
$ SUB_GENE_SYMB : chr "FAM168B" "SH3PXD2B" "Szt2" "Tpx2" ...
$ SUB_MOD_RSD : chr "T57" "Y508" "S3230" "T369" ...
$ SITE_GRP_ID : int 9831677 17303901 14575118 455432 3202029 3963101 975498 468668 451197 454238 ...
$ IN_VIVO_RXN : Factor w/ 2 levels " ","X": 1 2 2 1 1 1 2 1 2 2 ...
$ IN_VITRO_RXN : Factor w/ 2 levels " ","X": 2 1 1 2 2 2 1 2 2 2 ...
$ CST_CAT. : Factor w/ 563 levels "","11817","11834",..: 1 1 1 1 1 1 1 1 1 1 ...
$ PhosphositePLUS : num 1 1 1 1 1 1 1 1 1 1 ...
$ SEQ : chr "MNPVYSPGSSGVPYANAKGIGYPAGFPMGYAAAAPAYSPNMYPGANPTFQTGYTPGTPYKVSCSPTSGAVPPYSSSPNPYQTAVYPVRSAYPQQSPYAQQGTYYTQPLYAAPPHVIHHTTVVQPNGM"| __truncated__ "MPPRRSIVEVKVLDVQKRRVPNKHYVYIIRVTWSSGSTEAIYRRYSKFFDLQMQMLDKFPMEGGQKDPKQRIIPFLPGKILFRRSHIRDVAVKRLIPIDEYCKALIQLPPYISQCDEVLQFFETRPE"| __truncated__ "MASERPEPEVEEAGQVFLLMKKDYRISRNVRLAWFLNHLHQTVQATPQELLLQSEQELEVLSVLPPGWQPDEPVVPRPFLLVPSTRVTFLAWQYRFVIELDLSPSTGIVDDSTGEILFDEVFHALSR"| __truncated__ "MSQVPTTYSFDAPTDFINFSSLDAEEDTENIDSWFDEKANLENKFLRQRGIGEPFQGKNSLRKAKLQQGFVTPLKAVDNTYHKETEKENLQKQSIPSNDCSSLDAKRAVSGNTPVQPQRRSIRLSAQ"| __truncated__ ...
$ PhosphoELM : num NA NA NA NA NA NA NA NA NA NA ...
$ SwissProt : chr NA NA NA NA ...
$ PubMed : Factor w/ 2842 levels "",";","10023679;",..: NA NA NA NA NA NA NA NA NA NA ...
$ KIN_GENE_ID : chr NA NA NA NA ...
$ HPRD : num NA NA NA NA NA NA NA NA NA NA ...
$ PhosphoPoint : num NA NA NA NA NA NA NA NA NA NA ...
$ SUB_HPRD_ID : int NA NA NA NA NA NA NA NA NA NA ...
$ SUB_HPRDISO_ID : Factor w/ 13183 levels "00001_1","00002_1",..: NA NA NA NA NA NA NA NA NA NA ...
$ KIN_HPRD_ID : Factor w/ 517 levels "-","00021","00084",..: NA NA NA NA NA NA NA NA NA NA ...
$ SUB_ACC_ID.human : chr "A1KXE4" "A1X283" "Q5T011" "Q9ULW0" ...
$ Position : chr "57" "508" "3230" "369" ...
$ MODSITE_SEQ.human : chr "QTGYTPGTPYKVSCS" "DMSASAGYEEISDPD" "APGSSAGSPGEASGL" "KICRDPQTPVLQTKH" ...
$ MODSITE_SEQ.mouse : chr "QTGYTPGTPYKVSCS" "DLSASTGYEEISDPT" "TPGSLVGSPREASGM" "KIARDPQTPILQTKY" ...
$ SUB_ACC_ID.mouse : chr "Q80XQ8" "A2AAY5" "A2A9C3" "A2APB8" ...
$ KIN_ACC_ID.human : chr "P24941" "P12931" "P42345" "P28482" ...
$ KIN_GENE_SYMB.human: chr "CDK2" "SRC" "MTOR" "MAPK1" ...
$ SUB_IDENT : chr "A1KXE4_QTGYTPGTPYKVSCS" "A1X283_DMSASAGYEEISDPD" "Q5T011_APGSSAGSPGEASGL" "Q9ULW0_KICRDPQTPVLQTKH" ...
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