base: Some Base Functions

In kyotil: Utility Functions for Statistical Analysis Report Generation and Monte Carlo Studies

Some Base Functions

Description

cbinduneven binds together a list of matrixes/dataframes of different lengths, rows are matched by names binary returns binary representation of an integer. binary2 returns binary representatin of an integer with leading 0, the length of string is n. mysystem can call any exe file that is in the PATH f2c convert temperature from f to c/

Usage

mytable (..., exclude = if (useNA == "no") c(NA, NaN), useNA = "ifany", 
  dnn = list.names(...), deparse.level = 1) 

cbinduneven(li)

binary(i)

multi.outer (f, ... ) 

myreshapelong(dat, cols.to.be.stacked, label.cols.to.be.stacked, new.col.name)

binary2(i, n)

f2c(f)

ftoi(f)

keepWarnings(expr)

meanmed(x, na.rm = FALSE)


myaggregate(x, by, FUN, new.col.name = "aggregate.value", ...)

myreshapewide(formula, dat, idvar, keep.extra.col=FALSE)

mysapply(X, FUN, ..., simplify = TRUE, USE.NAMES = TRUE, ret.mat = TRUE)

myscale(x)

mysystem(cmd, ...)

mytapply(X, INDEX, FUN = NULL, ..., simplify = TRUE)

read.sv(file, header = TRUE, ...)

read.tsv(file, header = TRUE, sep = "\t", ...)

table.prop(x,y=NULL,digit=1,style=2,whole.table.add.to.1=FALSE,useNA="ifany",
    add.perc=FALSE, add.total.column = FALSE)

table.cases  (case,group,include.all=TRUE,desc="cases")
table.cases.3(case,group1,group2)

unix()

mycor (x, use = "everything", method = c("pearson", "kendall", "spearman"), 
    alternative = c("two.sided", "less", "greater"), exact = NULL, 
    conf.level = 0.95, continuity = FALSE, 
    digits.coef=2, digits.pval=3,
    ...) 

Arguments

exclude	exclude
dnn	dnn
deparse.level	deparse.level
add.total.column	tbdi
use	tbdi
method	tbdi
alternative	tbdi
exact	tbdi
conf.level	tbdi
continuity	tbdi
digits.coef	tbdi
digits.pval	tbdi
cols.to.be.stacked	tbdi
label.cols.to.be.stacked	tbdi
li	a list
i	tbdi
n	tbdn
f	In multi.out, f is a function.
case	vector of 0/1
group	vector of multi-group indicators
formula	a formula object.
expr	tbdexpr
x	tbdx
na.rm	tbdna.rm
desc	tbdby
by	tbdby
whole.table.add.to.1	Boolean
new.col.name	tbdnew.col.name
...	tbd...
dat	tbddat
idvar	tbdidvar
X	tbdX
simplify	tbdsimplify
USE.NAMES	tbdUSE.NAMES
ret.mat	tbdret.mat
cmd	tbdcmd
INDEX	tbdINDEX
file	tbdfile
header	tbdheader
sep	tbdsep
y	tbdy
digit	tbddigit
style	tbdstyle
FUN	tbdFUN
keep.extra.col	tbdFUN
useNA	tbdFUN
add.perc	tbdFUN
include.all	tbdFUN
group1	tbdFUN
group2	tbdFUN

Examples

binary(5) ###  101
binary2(5, 4)

a=data.frame("x"=1:2)
b=data.frame("y"=3:5);#rownames(b)[3]=""
cbinduneven(list(a,b))

## Not run: 
# the formula in myreshapewide can only have one variable in the right hand side
    myreshapewide(fi~week, dat, c("ptid","stim"))

    myreshapelong(dat.201.neut, cols.to.be.stacked=c("MN.3","SF162","SVA.MLV"), 
        label.cols.to.be.stacked="antigen", new.col.name="y")

    myaggregate(subset(dat.poc, select=c(HIV, trt)), list(dat.poc$f), function(x) 
      with(x, c(fisher.test(HIV, trt)$estimate, fisher.test(HIV, trt)$p.value)))



## End(Not run)

kyotil documentation built on Nov. 3, 2024, 9:08 a.m.