R/data.R

In langevitour: Langevin Tour

#' Principal components of scRNA-Seq of mouse brain cells
#'
#' Single-cell RNA-Seq gene expression of 2,816 mouse brain cells (Zeisel, 2015). The top 10 principal components were produced using the steps in the \href{https://bioconductor.org/books/3.13/OSCA.workflows/zeisel-mouse-brain-strt-seq.html}{Bioconductor OSCA workflow}.
#'
#' @format A data frame with 2,816 rows representing brain cells and 11 columns:
#' \describe{
#'    \item{type}{Cell type.}
#'    \item{PC1}{Principal component score.}
#'    \item{PC2}{Principal component score.}
#'    \item{PC3}{Principal component score.}
#'    \item{PC4}{Principal component score.}
#'    \item{PC5}{Principal component score.}
#'    \item{PC6}{Principal component score.}
#'    \item{PC7}{Principal component score.}
#'    \item{PC8}{Principal component score.}
#'    \item{PC9}{Principal component score.}
#'    \item{PC10}{Principal component score.}
#' }
#'
#' @usage data(zeiselPC)
#'
#' @examples
#' data(zeiselPC)
#' langevitour(zeiselPC[,-1], zeiselPC$type)
#'
#' @references
#' Zeisel, A., Muñoz-Manchado, A. B., Codeluppi, S., Lönnerberg, P., La Manno, G., Juréus, A., Marques, S., Munguba, H., He, L., Betsholtz, C., Rolny, C., Castelo-Branco, G., Hjerling-Leffler, J., & Linnarsson, S. (2015). Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq. \emph{Science}, 347(6226), 1138–1142. \doi{10.1126/science.aaa1934} 
#'
"zeiselPC"