ldstatsHD: Linear Dependence Statistics for High-Dimensional Data

Statistical methods related to the estimation and testing of multiple correlation, partial correlation and regression coefficient matrices when data is high-dimensional.

AuthorAdria Caballe <a.caballe@sms.ed.ac.uk>
Date of publication2016-08-18 15:57:55
MaintainerAdria Caballe <a.caballe@sms.ed.ac.uk>
LicenseGPL-3
Version1.0.0

View on CRAN

Man pages

aagnesLambdaSelection: Augmented-MSE regularization parameter selection

agnesAC: AGNES coefficient

agnesLambdaSelection: AGNES regularization parameter selection

aicBicLambdaSelection: AIC/BIC regularization parameter selection

cor2mean: Average square correlation by rows

cor2meanAdj: adjusted average square correlation by rows

eqCorrMatTest: equality of two correlation matrices test

eqCorTestByRows: Correlation matrices test by rows

EstradaIndex: Estrada Index of a graph structure

graphCorr: One minus graph correlation matrix

graphDist: Inverse of the geodesic distance matrix

harmonicMean: Harmonic mean of network distances

lambdaSelection: Regularization parameter selection based on network...

ldstatsHD-internal: Internal functions

ldstatsHD-package: Linear Dependence Statistics for High-Dimensional data

pcLambdaSelection: Path Connectivity regularization parameter selection

pcorSimulator: Partial Correlation Matrix simulator

pcorSimulatorJoint: joint partial correlation matrices simulator

plotequalityCorrelationsByRows: plot for equality of two correlation matrices by rows test

plotPcorSimulator: Partial correlation matrix simulator plot

plotPcorSimulatorJoint: Joint partial correlation matrix simulator plot

plotwfgl: Joint partial correlation matrix estimator plot

plotwfrl: Joint regression coefficient matrix estimator plot

vulnLambdaSelection: Vulnerability regularization parameter selection

wfgl: weighted fused graphical lasso

wfrl: joint estimation of multiple regression coefficient matrices

Functions

agnesCoef Man page
agnesLambdaSelection Man page
aicAndbicLambdaSelection Man page
amseLambdaSelection Man page
asMatrix2 Man page
connBtwClusters Man page
controlseqCorTestByRows Man page
controlsPcorSimulator Man page
controlsPcorSimulatorJoint Man page
controlwfgl Man page
controlwfrl Man page
cor2mean Man page
cor2mean.adj Man page
covCrosCor Man page
eqCorrMatTest Man page
eqCorTestByRows Man page
estradaIndex Man page
findAlmTriangles Man page
findingLambda2 Man page
findTriangles Man page
flsaFast Man page
graphCorr Man page
graphDist Man page
graphStructure Man page
harmMeanDist Man page
lambdaSelection Man page
ldstatsHD Man page
ldstatsHD-internal Man page
ldstatsHD-package Man page
lowerTri Man page
lowerTriInd Man page
lowerTriMatInd Man page
meanCors Man page
pcLambdaSelection Man page
pcor2jointGraph Man page
pcorSimulator Man page
pcorSimulatorJoint Man page
plot.eqCorTestByRows Man page
plot.lambdaSelection Man page
plot.pcorSim Man page
plot.pcorSimJoint Man page
plot.wfgl Man page
plot.wfrl Man page
print.eqCorrMatTest Man page
print.eqCorTestByRows Man page
print.lambdaSelection Man page
print.pcorSim Man page
print.pcorSimulatorJoint Man page
print.wfgl Man page
print.wfrl Man page
pvaluesTriangleWeakestEdge Man page
rowScale Man page
rowVars Man page
softA Man page
squareWeight Man page
summary.eqCorrMatTest Man page
summary.eqCorTestByRows Man page
summary.lambdaSelection Man page
summary.pcorSim Man page
summary.pcorSimulatorJoint Man page
summary.wfgl Man page
summary.wfrl Man page
thetaFromCor Man page
upperTri Man page
vulLambdaSelection Man page
wfgl Man page
wfglaux Man page
wfrl Man page
wfrlaux Man page
ztransf Man page
ztransfCorrDiff Man page
ztransfCorrDiffsub Man page

Files

ldstatsHD
ldstatsHD/NAMESPACE
ldstatsHD/R
ldstatsHD/R/controlswfgl.r
ldstatsHD/R/summarylambdaSelection.r
ldstatsHD/R/wfgl.r
ldstatsHD/R/plotEqCorrMatTest.r
ldstatsHD/R/rowScale.r
ldstatsHD/R/ztransfCorrDiff.r
ldstatsHD/R/printEqCorrTestByRows.r
ldstatsHD/R/equalCorrelationsTestPerm.r
ldstatsHD/R/degrees.r
ldstatsHD/R/cor2mean.r
ldstatsHD/R/equalCorrelationsTestSS.r
ldstatsHD/R/controlsCorrelationsTestByRows.r
ldstatsHD/R/plotwfrl.r
ldstatsHD/R/harmMean.r
ldstatsHD/R/agnesAC.r
ldstatsHD/R/identCorrelationMatricesTest.r
ldstatsHD/R/pcorSimulatorJoint.r
ldstatsHD/R/wfrl.r
ldstatsHD/R/plotlambdaSelection.r
ldstatsHD/R/ztransf.r
ldstatsHD/R/summarywfgl.r
ldstatsHD/R/controlsPcorSimulatorJoint.r
ldstatsHD/R/lambdaSelection.r
ldstatsHD/R/equalityCorrelationsTestByRows.r
ldstatsHD/R/flsaFast.r
ldstatsHD/R/estradaIndex.r
ldstatsHD/R/equalCorrelationsTestMax.r
ldstatsHD/R/controlswfrl.r
ldstatsHD/R/correlationTestByRows.r
ldstatsHD/R/equalCorrelationMatricesTestFunc.r
ldstatsHD/R/summarywfrl.r
ldstatsHD/R/covCrosCor.r
ldstatsHD/R/plotwfgl.r
ldstatsHD/R/plotPcorSim.r
ldstatsHD/R/findTriangles.r
ldstatsHD/R/connBtwClusters.r
ldstatsHD/R/printEqCorrMatTest.r
ldstatsHD/R/aagnesLambdaSelection.r
ldstatsHD/R/plotEqCorrTestByRows.r
ldstatsHD/R/pvaluesTriangleWeakestEdge.r
ldstatsHD/R/printlambdaSelection.r
ldstatsHD/R/graphDist.r
ldstatsHD/R/pcor2jointGraph.r
ldstatsHD/R/graphCorr.r
ldstatsHD/R/agnesLambdaSelection.r
ldstatsHD/R/pcorSimulator.R
ldstatsHD/R/vulLambdaSelection.r
ldstatsHD/R/printPcorSim.r
ldstatsHD/R/printPcorSimJoint.r
ldstatsHD/R/printwfrl.r
ldstatsHD/R/softA.R
ldstatsHD/R/pcLambdaSelection.r
ldstatsHD/R/meanCors.r
ldstatsHD/R/lowerTriInd.r
ldstatsHD/R/summaryEqCorrMatTest.r
ldstatsHD/R/summaryPcorSim.r
ldstatsHD/R/equalCorrelationMatricesTest.r
ldstatsHD/R/graphStructure.R
ldstatsHD/R/summaryEqCorrTestByRows.r
ldstatsHD/R/aicLambdaSelection.r
ldstatsHD/R/cor2meanAdj.r
ldstatsHD/R/equalityCorrelationsTestByRowsFunc.r
ldstatsHD/R/controlsPcorSimulator.r
ldstatsHD/R/pcorSimulatorJointPaired.r
ldstatsHD/R/lowerTri.r
ldstatsHD/R/lowerTriSub.r
ldstatsHD/R/printwfgl.r
ldstatsHD/R/summaryPcorSimJoint.r
ldstatsHD/R/plotPcorSimJoint.r
ldstatsHD/R/equalCorrelationsTestExc.r
ldstatsHD/MD5
ldstatsHD/DESCRIPTION
ldstatsHD/man
ldstatsHD/man/plotwfgl.Rd ldstatsHD/man/EstradaIndex.Rd ldstatsHD/man/agnesLambdaSelection.Rd ldstatsHD/man/ldstatsHD-internal.Rd ldstatsHD/man/plotPcorSimulatorJoint.Rd ldstatsHD/man/harmonicMean.Rd ldstatsHD/man/cor2meanAdj.Rd ldstatsHD/man/aicBicLambdaSelection.Rd ldstatsHD/man/eqCorrMatTest.Rd ldstatsHD/man/graphDist.Rd ldstatsHD/man/pcorSimulatorJoint.Rd ldstatsHD/man/graphCorr.Rd ldstatsHD/man/pcorSimulator.Rd ldstatsHD/man/vulnLambdaSelection.Rd ldstatsHD/man/wfgl.Rd ldstatsHD/man/pcLambdaSelection.Rd ldstatsHD/man/lambdaSelection.Rd ldstatsHD/man/aagnesLambdaSelection.Rd ldstatsHD/man/plotequalityCorrelationsByRows.Rd ldstatsHD/man/wfrl.Rd ldstatsHD/man/eqCorTestByRows.Rd ldstatsHD/man/plotPcorSimulator.Rd ldstatsHD/man/ldstatsHD-package.Rd ldstatsHD/man/plotwfrl.Rd ldstatsHD/man/cor2mean.Rd ldstatsHD/man/agnesAC.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.