ldstatsHD: Linear Dependence Statistics for High-Dimensional Data
Version 1.0.0

Statistical methods related to the estimation and testing of multiple correlation, partial correlation and regression coefficient matrices when data is high-dimensional.

Browse man pages Browse package API and functions Browse package files

AuthorAdria Caballe <a.caballe@sms.ed.ac.uk>
Date of publication2016-08-18 15:57:55
MaintainerAdria Caballe <a.caballe@sms.ed.ac.uk>
LicenseGPL-3
Version1.0.0
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("ldstatsHD")

Man pages

aagnesLambdaSelection: Augmented-MSE regularization parameter selection
agnesAC: AGNES coefficient
agnesLambdaSelection: AGNES regularization parameter selection
aicBicLambdaSelection: AIC/BIC regularization parameter selection
cor2mean: Average square correlation by rows
cor2meanAdj: adjusted average square correlation by rows
eqCorrMatTest: equality of two correlation matrices test
eqCorTestByRows: Correlation matrices test by rows
EstradaIndex: Estrada Index of a graph structure
graphCorr: One minus graph correlation matrix
graphDist: Inverse of the geodesic distance matrix
harmonicMean: Harmonic mean of network distances
lambdaSelection: Regularization parameter selection based on network...
ldstatsHD-internal: Internal functions
ldstatsHD-package: Linear Dependence Statistics for High-Dimensional data
pcLambdaSelection: Path Connectivity regularization parameter selection
pcorSimulator: Partial Correlation Matrix simulator
pcorSimulatorJoint: joint partial correlation matrices simulator
plotequalityCorrelationsByRows: plot for equality of two correlation matrices by rows test
plotPcorSimulator: Partial correlation matrix simulator plot
plotPcorSimulatorJoint: Joint partial correlation matrix simulator plot
plotwfgl: Joint partial correlation matrix estimator plot
plotwfrl: Joint regression coefficient matrix estimator plot
vulnLambdaSelection: Vulnerability regularization parameter selection
wfgl: weighted fused graphical lasso
wfrl: joint estimation of multiple regression coefficient matrices

Functions

agnesCoef Man page Source code
agnesLambdaSelection Man page Source code
aicAndbicLambdaSelection Man page Source code
amseLambdaSelection Man page Source code
asMatrix2 Man page Source code
connBtwClusters Man page Source code
controlsPcorSimulator Man page Source code
controlsPcorSimulatorJoint Man page Source code
controlseqCorTestByRows Man page Source code
controlwfgl Man page Source code
controlwfrl Man page Source code
cor2mean Man page Source code
cor2mean.adj Man page Source code
correlationTest.byRows Source code
covCrosCor Man page Source code
degrees Source code
eqCorTestByRows Man page Source code
eqCorrMatTest Man page Source code
eqCorrelationTest.byRows Source code
equalCorrelationMatrices.test Source code
equalCorrelationsTestExc Source code
equalCorrelationsTestMax Source code
equalCorrelationsTestPerm Source code
equalCorrelationsTestSS Source code
estradaIndex Man page Source code
findAlmTriangles Man page Source code
findTriangles Man page Source code
findingLambda2 Man page Source code
flsaFast Man page Source code
graphCorr Man page Source code
graphDist Man page Source code
graphStructure Man page Source code
harmMeanDist Man page Source code
identCorrelationMatrices.test Source code
lambdaSelection Man page Source code
ldstatsHD Man page
ldstatsHD-internal Man page
ldstatsHD-package Man page
lowerTri Man page Source code
lowerTriInd Man page Source code
lowerTriMatInd Man page Source code
meanCors Man page Source code
pcLambdaSelection Man page Source code
pcor2jointGraph Man page Source code
pcorSimulator Man page Source code
pcorSimulatorJoint Man page Source code
pcorSimulatorTwo Source code
plot.eqCorTestByRows Man page Source code Source code
plot.lambdaSelection Man page Source code
plot.pcorSim Man page Source code
plot.pcorSimJoint Man page Source code
plot.wfgl Man page Source code
plot.wfrl Man page Source code
print.eqCorTestByRows Man page Source code
print.eqCorrMatTest Man page Source code
print.lambdaSelection Man page Source code
print.pcorSim Man page Source code
print.pcorSimJoint Source code
print.pcorSimulatorJoint Man page
print.wfgl Man page Source code
print.wfrl Man page Source code
pvaluesTriangleWeakestEdge Man page Source code
rowScale Man page Source code
rowVars Man page Source code
softA Man page Source code
squareWeight Man page Source code
summary.eqCorTestByRows Man page Source code
summary.eqCorrMatTest Man page Source code
summary.lambdaSelection Man page Source code
summary.pcorSim Man page Source code
summary.pcorSimJoint Source code
summary.pcorSimulatorJoint Man page
summary.wfgl Man page Source code
summary.wfrl Man page Source code
thetaFromCor Man page Source code
upperTri Man page Source code
vulLambdaSelection Man page Source code
wfgl Man page Source code
wfglaux Man page Source code
wfrl Man page Source code
wfrlaux Man page Source code
ztransf Man page Source code
ztransfCorrDiff Man page Source code
ztransfCorrDiffsub Man page Source code

Files

NAMESPACE
R
R/controlswfgl.r
R/summarylambdaSelection.r
R/wfgl.r
R/plotEqCorrMatTest.r
R/rowScale.r
R/ztransfCorrDiff.r
R/printEqCorrTestByRows.r
R/equalCorrelationsTestPerm.r
R/degrees.r
R/cor2mean.r
R/equalCorrelationsTestSS.r
R/controlsCorrelationsTestByRows.r
R/plotwfrl.r
R/harmMean.r
R/agnesAC.r
R/identCorrelationMatricesTest.r
R/pcorSimulatorJoint.r
R/wfrl.r
R/plotlambdaSelection.r
R/ztransf.r
R/summarywfgl.r
R/controlsPcorSimulatorJoint.r
R/lambdaSelection.r
R/equalityCorrelationsTestByRows.r
R/flsaFast.r
R/estradaIndex.r
R/equalCorrelationsTestMax.r
R/controlswfrl.r
R/correlationTestByRows.r
R/equalCorrelationMatricesTestFunc.r
R/summarywfrl.r
R/covCrosCor.r
R/plotwfgl.r
R/plotPcorSim.r
R/findTriangles.r
R/connBtwClusters.r
R/printEqCorrMatTest.r
R/aagnesLambdaSelection.r
R/plotEqCorrTestByRows.r
R/pvaluesTriangleWeakestEdge.r
R/printlambdaSelection.r
R/graphDist.r
R/pcor2jointGraph.r
R/graphCorr.r
R/agnesLambdaSelection.r
R/pcorSimulator.R
R/vulLambdaSelection.r
R/printPcorSim.r
R/printPcorSimJoint.r
R/printwfrl.r
R/softA.R
R/pcLambdaSelection.r
R/meanCors.r
R/lowerTriInd.r
R/summaryEqCorrMatTest.r
R/summaryPcorSim.r
R/equalCorrelationMatricesTest.r
R/graphStructure.R
R/summaryEqCorrTestByRows.r
R/aicLambdaSelection.r
R/cor2meanAdj.r
R/equalityCorrelationsTestByRowsFunc.r
R/controlsPcorSimulator.r
R/pcorSimulatorJointPaired.r
R/lowerTri.r
R/lowerTriSub.r
R/printwfgl.r
R/summaryPcorSimJoint.r
R/plotPcorSimJoint.r
R/equalCorrelationsTestExc.r
MD5
DESCRIPTION
man
man/plotwfgl.Rd
man/EstradaIndex.Rd
man/agnesLambdaSelection.Rd
man/ldstatsHD-internal.Rd
man/plotPcorSimulatorJoint.Rd
man/harmonicMean.Rd
man/cor2meanAdj.Rd
man/aicBicLambdaSelection.Rd
man/eqCorrMatTest.Rd
man/graphDist.Rd
man/pcorSimulatorJoint.Rd
man/graphCorr.Rd
man/pcorSimulator.Rd
man/vulnLambdaSelection.Rd
man/wfgl.Rd
man/pcLambdaSelection.Rd
man/lambdaSelection.Rd
man/aagnesLambdaSelection.Rd
man/plotequalityCorrelationsByRows.Rd
man/wfrl.Rd
man/eqCorTestByRows.Rd
man/plotPcorSimulator.Rd
man/ldstatsHD-package.Rd
man/plotwfrl.Rd
man/cor2mean.Rd
man/agnesAC.Rd
ldstatsHD documentation built on May 19, 2017, 7:07 a.m.