ldstatsHD: Linear Dependence Statistics for High-Dimensional Data

Statistical methods related to the estimation and testing of multiple correlation, partial correlation and regression coefficient matrices when data is high-dimensional.

Author
Adria Caballe <a.caballe@sms.ed.ac.uk>
Date of publication
2016-08-18 15:57:55
Maintainer
Adria Caballe <a.caballe@sms.ed.ac.uk>
License
GPL-3
Version
1.0.0

View on CRAN

Man pages

aagnesLambdaSelection
Augmented-MSE regularization parameter selection
agnesAC
AGNES coefficient
agnesLambdaSelection
AGNES regularization parameter selection
aicBicLambdaSelection
AIC/BIC regularization parameter selection
cor2mean
Average square correlation by rows
cor2meanAdj
adjusted average square correlation by rows
eqCorrMatTest
equality of two correlation matrices test
eqCorTestByRows
Correlation matrices test by rows
EstradaIndex
Estrada Index of a graph structure
graphCorr
One minus graph correlation matrix
graphDist
Inverse of the geodesic distance matrix
harmonicMean
Harmonic mean of network distances
lambdaSelection
Regularization parameter selection based on network...
ldstatsHD-internal
Internal functions
ldstatsHD-package
Linear Dependence Statistics for High-Dimensional data
pcLambdaSelection
Path Connectivity regularization parameter selection
pcorSimulator
Partial Correlation Matrix simulator
pcorSimulatorJoint
joint partial correlation matrices simulator
plotequalityCorrelationsByRows
plot for equality of two correlation matrices by rows test
plotPcorSimulator
Partial correlation matrix simulator plot
plotPcorSimulatorJoint
Joint partial correlation matrix simulator plot
plotwfgl
Joint partial correlation matrix estimator plot
plotwfrl
Joint regression coefficient matrix estimator plot
vulnLambdaSelection
Vulnerability regularization parameter selection
wfgl
weighted fused graphical lasso
wfrl
joint estimation of multiple regression coefficient matrices

Files in this package

ldstatsHD
ldstatsHD/NAMESPACE
ldstatsHD/R
ldstatsHD/R/controlswfgl.r
ldstatsHD/R/summarylambdaSelection.r
ldstatsHD/R/wfgl.r
ldstatsHD/R/plotEqCorrMatTest.r
ldstatsHD/R/rowScale.r
ldstatsHD/R/ztransfCorrDiff.r
ldstatsHD/R/printEqCorrTestByRows.r
ldstatsHD/R/equalCorrelationsTestPerm.r
ldstatsHD/R/degrees.r
ldstatsHD/R/cor2mean.r
ldstatsHD/R/equalCorrelationsTestSS.r
ldstatsHD/R/controlsCorrelationsTestByRows.r
ldstatsHD/R/plotwfrl.r
ldstatsHD/R/harmMean.r
ldstatsHD/R/agnesAC.r
ldstatsHD/R/identCorrelationMatricesTest.r
ldstatsHD/R/pcorSimulatorJoint.r
ldstatsHD/R/wfrl.r
ldstatsHD/R/plotlambdaSelection.r
ldstatsHD/R/ztransf.r
ldstatsHD/R/summarywfgl.r
ldstatsHD/R/controlsPcorSimulatorJoint.r
ldstatsHD/R/lambdaSelection.r
ldstatsHD/R/equalityCorrelationsTestByRows.r
ldstatsHD/R/flsaFast.r
ldstatsHD/R/estradaIndex.r
ldstatsHD/R/equalCorrelationsTestMax.r
ldstatsHD/R/controlswfrl.r
ldstatsHD/R/correlationTestByRows.r
ldstatsHD/R/equalCorrelationMatricesTestFunc.r
ldstatsHD/R/summarywfrl.r
ldstatsHD/R/covCrosCor.r
ldstatsHD/R/plotwfgl.r
ldstatsHD/R/plotPcorSim.r
ldstatsHD/R/findTriangles.r
ldstatsHD/R/connBtwClusters.r
ldstatsHD/R/printEqCorrMatTest.r
ldstatsHD/R/aagnesLambdaSelection.r
ldstatsHD/R/plotEqCorrTestByRows.r
ldstatsHD/R/pvaluesTriangleWeakestEdge.r
ldstatsHD/R/printlambdaSelection.r
ldstatsHD/R/graphDist.r
ldstatsHD/R/pcor2jointGraph.r
ldstatsHD/R/graphCorr.r
ldstatsHD/R/agnesLambdaSelection.r
ldstatsHD/R/pcorSimulator.R
ldstatsHD/R/vulLambdaSelection.r
ldstatsHD/R/printPcorSim.r
ldstatsHD/R/printPcorSimJoint.r
ldstatsHD/R/printwfrl.r
ldstatsHD/R/softA.R
ldstatsHD/R/pcLambdaSelection.r
ldstatsHD/R/meanCors.r
ldstatsHD/R/lowerTriInd.r
ldstatsHD/R/summaryEqCorrMatTest.r
ldstatsHD/R/summaryPcorSim.r
ldstatsHD/R/equalCorrelationMatricesTest.r
ldstatsHD/R/graphStructure.R
ldstatsHD/R/summaryEqCorrTestByRows.r
ldstatsHD/R/aicLambdaSelection.r
ldstatsHD/R/cor2meanAdj.r
ldstatsHD/R/equalityCorrelationsTestByRowsFunc.r
ldstatsHD/R/controlsPcorSimulator.r
ldstatsHD/R/pcorSimulatorJointPaired.r
ldstatsHD/R/lowerTri.r
ldstatsHD/R/lowerTriSub.r
ldstatsHD/R/printwfgl.r
ldstatsHD/R/summaryPcorSimJoint.r
ldstatsHD/R/plotPcorSimJoint.r
ldstatsHD/R/equalCorrelationsTestExc.r
ldstatsHD/MD5
ldstatsHD/DESCRIPTION
ldstatsHD/man
ldstatsHD/man/plotwfgl.Rd
ldstatsHD/man/EstradaIndex.Rd
ldstatsHD/man/agnesLambdaSelection.Rd
ldstatsHD/man/ldstatsHD-internal.Rd
ldstatsHD/man/plotPcorSimulatorJoint.Rd
ldstatsHD/man/harmonicMean.Rd
ldstatsHD/man/cor2meanAdj.Rd
ldstatsHD/man/aicBicLambdaSelection.Rd
ldstatsHD/man/eqCorrMatTest.Rd
ldstatsHD/man/graphDist.Rd
ldstatsHD/man/pcorSimulatorJoint.Rd
ldstatsHD/man/graphCorr.Rd
ldstatsHD/man/pcorSimulator.Rd
ldstatsHD/man/vulnLambdaSelection.Rd
ldstatsHD/man/wfgl.Rd
ldstatsHD/man/pcLambdaSelection.Rd
ldstatsHD/man/lambdaSelection.Rd
ldstatsHD/man/aagnesLambdaSelection.Rd
ldstatsHD/man/plotequalityCorrelationsByRows.Rd
ldstatsHD/man/wfrl.Rd
ldstatsHD/man/eqCorTestByRows.Rd
ldstatsHD/man/plotPcorSimulator.Rd
ldstatsHD/man/ldstatsHD-package.Rd
ldstatsHD/man/plotwfrl.Rd
ldstatsHD/man/cor2mean.Rd
ldstatsHD/man/agnesAC.Rd