FindFpr: Compute the false positive rate at given sizes of retrieved...

In leapp: Latent Effect Adjustment After Primary Projection

Compute the false positive rate at given sizes of retrieved genes

Description

Given a vector of sizes of retrieved genes, for each size k, select the top k genes with smallest p values and compute the false positive rate from the retrieved genes and the true positive genes.

Usage

 FindFpr(pvalue, ind,topk)

Arguments

pvalue	A vector of p values, one for each gene, with length m
ind	A vector of indices that the corresponding gene are true positive
topk	A vector of integers ranging from 1 to m , length of retrieved gene list

Value

fpr	A vector of false positive rates at given sizes of retrieval.

Author(s)

Yunting Sun [e-mail], Nancy R.Zhang [e-mail], Art B.Owen [e-mail]

leapp documentation built on June 20, 2022, 1:05 a.m.