lefse: Phylogenetic and Functional Analyses for Ecology

Share:

Utilizing phylogenetic and functional information for the analyses of ecological datasets. The analyses include methods for quantifying the phylogenetic and functional diversity of assemblages.

Author
Nathan G. Swenson
Date of publication
2014-09-11 21:03:26
Maintainer
Nathan G. Swenson <swensonn@msu.edu>
License
GPL-2 | GPL-3
Version
0.1

View on CRAN

Man pages

com.trait.moments
com.trait.moments
com.trait.weighted
Quantifies the moments of the community trait distribution...
Fmntd
Functional NND
Fmntd.a
Functional NND with abundance
Fmpd
Functional MPD no with abundance
Fmpd.a
Functional MPD with abundance
Fsntd
Functional standard deviation of the NND
lefse.sample
Community data matrix for lefse
lefse.traits
Example trait dataset for lefse
sntd.a
Functional standard deviation of the NND with abundance...
trait.range
Range of trait values in a community

Files in this package

lefse
lefse/NAMESPACE
lefse/data
lefse/data/lefse.traits.rda
lefse/data/lefse.sample.rda
lefse/R
lefse/R/trait.range.R
lefse/R/com.trait.moments.R
lefse/R/sntd.a.R
lefse/R/Fmntd.R
lefse/R/Fmpd.R
lefse/R/com.trait.weighted.R
lefse/R/Fsntd.R
lefse/R/Fmpd.a.R
lefse/R/Fmntd.a.R
lefse/MD5
lefse/DESCRIPTION
lefse/man
lefse/man/Fmpd.Rd
lefse/man/Fmntd.Rd
lefse/man/lefse.traits.Rd
lefse/man/trait.range.Rd
lefse/man/com.trait.moments.Rd
lefse/man/com.trait.weighted.Rd
lefse/man/Fsntd.Rd
lefse/man/lefse.sample.Rd
lefse/man/Fmntd.a.Rd
lefse/man/Fmpd.a.Rd
lefse/man/sntd.a.Rd