lefse.sample: Community data matrix for lefse

In lefse: Phylogenetic and Functional Analyses for Ecology

Description

Community data matrix for lefse package. Matrix contains 10 species and 5 communities

Usage

data("lefse.sample")

Format

A data frame with 5 observations on the following 10 variables.

Source

Swenson, N.G. 2014. Functional and Phylogenetic Ecology in R. Springer UseR! Series, Springer, New York, New York, U.S.A.

Examples

data(lefse.sample)
lefse.sample
rowSums(lefse.sample)

Example output

     sp1 sp2 sp3 sp4 sp5 sp6 sp7 sp8 sp9 sp10
com1   1   2   0   0  82   0   0   0   0    0
com2   0   0  32  50   0   0   0   0   1    0
com3   5   0   2   0   0  42   0  32   0    0
com4   0  20   0  32   4   0   2   0  10   40
com5   0   2  24  16  20   0   1  16   0    0
com1 com2 com3 com4 com5 
  85   83   81  108   79 

lefse documentation built on May 2, 2019, 11:27 a.m.