smoothLasso: smoothLasso

In lessSEM: Non-Smooth Regularization for Structural Equation Models

smoothLasso

Description

This function allows for regularization of models built in lavaan with the smoothed lasso penalty. The returned object is an S4 class; its elements can be accessed with the "@" operator (see examples). We don't recommend using this function. Use lasso() instead.

Usage

smoothLasso(
  lavaanModel,
  regularized,
  lambdas,
  epsilon,
  tau,
  modifyModel = lessSEM::modifyModel(),
  control = lessSEM::controlBFGS()
)

Arguments

lavaanModel	model of class lavaan
regularized	vector with names of parameters which are to be regularized. If you are unsure what these parameters are called, use getLavaanParameters(model) with your lavaan model object
lambdas	numeric vector: values for the tuning parameter lambda
epsilon	epsilon > 0; controls the smoothness of the approximation. Larger values = smoother
tau	parameters below threshold tau will be seen as zeroed
modifyModel	used to modify the lavaanModel. See ?modifyModel.
control	used to control the optimizer. This element is generated with the controlBFGS function. See ?controlBFGS for more details.

Details

For more details, see:

1. Lee, S.-I., Lee, H., Abbeel, P., & Ng, A. Y. (2006). Efficient L1 Regularized Logistic Regression. Proceedings of the Twenty-First National Conference on Artificial Intelligence (AAAI-06), 401–408.

2. Jacobucci, R., Grimm, K. J., & McArdle, J. J. (2016). Regularized Structural Equation Modeling. Structural Equation Modeling: A Multidisciplinary Journal, 23(4), 555–566. https://doi.org/10.1080/10705511.2016.1154793

Value

Model of class regularizedSEM

Examples

library(lessSEM)

# Identical to regsem, lessSEM builds on the lavaan
# package for model specification. The first step
# therefore is to implement the model in lavaan.

dataset <- simulateExampleData()

lavaanSyntax <- "
f =~ l1*y1 + l2*y2 + l3*y3 + l4*y4 + l5*y5 +
     l6*y6 + l7*y7 + l8*y8 + l9*y9 + l10*y10 +
     l11*y11 + l12*y12 + l13*y13 + l14*y14 + l15*y15
f ~~ 1*f
"

lavaanModel <- lavaan::sem(lavaanSyntax,
                           data = dataset,
                           meanstructure = TRUE,
                           std.lv = TRUE)

# Regularization:

lsem <- smoothLasso(
  # pass the fitted lavaan model
  lavaanModel = lavaanModel,
  # names of the regularized parameters:
  regularized = paste0("l", 6:15),
  epsilon = 1e-10,
  tau = 1e-4,
  lambdas = seq(0,1,length.out = 50))

# use the plot-function to plot the regularized parameters:
plot(lsem)

# the coefficients can be accessed with:
coef(lsem)

# elements of lsem can be accessed with the @ operator:
lsem@parameters[1,]

# AIC and BIC:
AIC(lsem)
BIC(lsem)

# The best parameters can also be extracted with:
coef(lsem, criterion = "AIC")
coef(lsem, criterion = "BIC")

lessSEM documentation built on May 29, 2024, 7:10 a.m.