letsR: Tools for Data Handling and Analysis in Macroecology

R functions for handling, processing, and analyzing geographic data on species' distributions and environmental variables as well as species' description and conservation information.

AuthorBruno Vilela & Fabricio Villalobos
Date of publication2016-06-02 18:16:05
MaintainerBruno Vilela <brunovilelasilva@hotmail.com>
LicenseGPL-2
Version2.6
http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12401/abstract, https://github.com/macroecology/letsR

View on CRAN

Man pages

IUCN: IUCN avaliation for frogs of Phyllomedusa genus

lets.addpoly: Add polygon coverage to a PresenceAbscence object

lets.addvar: Add variables (in raster format) to a PresenceAbscence object

lets.classvar: Frequency distribution of a variable within a species' range

lets.correl: Compute correlogram based on the Moran's I index

lets.distmat: Compute a geographic distance matrix

lets.field: Create species' values based on the species co-occurrence...

lets.gridirizer: Fits a grid into a PresenceAbsence object

lets.iucn: Download species' information from the IUCN RedList online...

lets.iucncont: Transform IUCN RedList conservation status to continuous...

lets.iucn.ha: Download species' habitat information from the IUCN RedList...

lets.iucn.his: Download species' temporal trend in conservation status from...

lets.maplizer: Create a matrix summarizing species' attributes within cells...

lets.midpoint: Compute the midpoint of species' geographic ranges

lets.overlap: Compute pairwise species' geographic overlaps

lets.pamcrop: Crop a PresenceAbsence object based on an input shapefile

lets.presab: Create a presence-absence matrix of species' geographic...

lets.presab.birds: Create a presence-absence matrix of species' geographic...

lets.presab.grid: Create a presence-absence matrix of species' geographic...

lets.presab.points: Create a presence-absence matrix based on species' point...

lets.rangesize: Compute species' geographic range sizes

letsR-package: Tools for Data Handling and Analysis in Macroecology.

lets.shFilter: Filter species' shapefiles based on its presence, origin, and...

lets.subsetPAM: Subset a PresenceAbsence object based on species names

lets.summarizer: Summarize variable(s) values in a presence-absence matrix...

lets.transf: Transform values of a vector

PAM: PresenceAbsence object for frogs of Phyllomedusa genus

Phyllomedusa: Geographic distribution of Phyllomedusa genus

plot.PresenceAbsence: Plot an object of class PresenceAbsence

PresenceAbsence: PresenceAbsence Class

print.PresenceAbsence: Print for object of class PresenceAbsence

print.summary.PresenceAbsence: Print summary for object of class PresenceAbsence

summary.PresenceAbsence: Summary for object of class PresenceAbsence

temp: Avarege temperature raster for the world.

Files in this package

letsR
letsR/inst
letsR/inst/CITATION
letsR/inst/extdata
letsR/inst/extdata/Ramphastos
letsR/inst/extdata/Ramphastos/Ramphastos_cuvieri_22682159.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_ariel_22726233.shx
letsR/inst/extdata/Ramphastos/Ramphastos_toco_22682164.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_ambiguus_22727999.shp
letsR/inst/extdata/Ramphastos/Ramphastos_dicolorus_22682129.shx
letsR/inst/extdata/Ramphastos/Ramphastos_cuvieri_22682159.shp
letsR/inst/extdata/Ramphastos/Ramphastos_tucanus_22682153.shp
letsR/inst/extdata/Ramphastos/Ramphastos_toco_22682164.shx
letsR/inst/extdata/Ramphastos/Ramphastos_cuvieri_22682159.shx
letsR/inst/extdata/Ramphastos/Ramphastos_brevis_22682105.shx
letsR/inst/extdata/Ramphastos/Ramphastos_citrolaemus_62220237.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_sulfuratus_22682102.prj
letsR/inst/extdata/Ramphastos/Ramphastos_ariel_22726233.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_cuvieri_22682159.prj
letsR/inst/extdata/Ramphastos/Ramphastos_tucanus_22682153.prj
letsR/inst/extdata/Ramphastos/Ramphastos_culminatus_22726239.prj
letsR/inst/extdata/Ramphastos/Ramphastos_tucanus_22682153.shx
letsR/inst/extdata/Ramphastos/Ramphastos_ambiguus_22727999.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_tucanus_22682153.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_citrolaemus_62220237.prj
letsR/inst/extdata/Ramphastos/Ramphastos_citrolaemus_62220237.shx
letsR/inst/extdata/Ramphastos/Ramphastos_culminatus_22726239.shp
letsR/inst/extdata/Ramphastos/Ramphastos_culminatus_22726239.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_vitellinus_22726222.shp
letsR/inst/extdata/Ramphastos/Ramphastos_ariel_22726233.prj
letsR/inst/extdata/Ramphastos/Ramphastos_dicolorus_22682129.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_dicolorus_22682129.shp
letsR/inst/extdata/Ramphastos/Ramphastos_ambiguus_22727999.prj
letsR/inst/extdata/Ramphastos/Ramphastos_brevis_22682105.prj
letsR/inst/extdata/Ramphastos/Ramphastos_toco_22682164.shp
letsR/inst/extdata/Ramphastos/Ramphastos_brevis_22682105.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_dicolorus_22682129.prj
letsR/inst/extdata/Ramphastos/Ramphastos_vitellinus_22726222.prj
letsR/inst/extdata/Ramphastos/Ramphastos_vitellinus_22726222.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_sulfuratus_22682102.shx
letsR/inst/extdata/Ramphastos/Ramphastos_ariel_22726233.shp
letsR/inst/extdata/Ramphastos/Ramphastos_citrolaemus_62220237.shp
letsR/inst/extdata/Ramphastos/Ramphastos_brevis_22682105.shp
letsR/inst/extdata/Ramphastos/Ramphastos_toco_22682164.prj
letsR/inst/extdata/Ramphastos/Ramphastos_sulfuratus_22682102.shp
letsR/inst/extdata/Ramphastos/Ramphastos_vitellinus_22726222.shx
letsR/inst/extdata/Ramphastos/Ramphastos_ambiguus_22727999.shx
letsR/inst/extdata/Ramphastos/Ramphastos_sulfuratus_22682102.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_culminatus_22726239.shx
letsR/tests
letsR/tests/testthat
letsR/tests/testthat/test-lets_iucn_ha.R
letsR/tests/testthat/test-lets_iucn_his.R
letsR/tests/testthat/test-lets_distmat.R
letsR/tests/testthat/test-lets_presab_points.R
letsR/tests/testthat/test-lets_addvar.R
letsR/tests/testthat/test-removecells.R
letsR/tests/testthat/test-lets_iuccont.R
letsR/tests/testthat/test-lets_transf.R
letsR/tests/testthat/test-lets_presab_birds.R
letsR/tests/testthat/test-lets_presab.R
letsR/tests/testthat/test-TimLucas.r
letsR/tests/testthat/test-unicas.R
letsR/tests/testthat/test-lets_overlap.R
letsR/tests/testthat/test-lets_field.R
letsR/tests/testthat/test-printplotsummary.R
letsR/tests/testthat/test-lets_correl.R
letsR/tests/testthat/test-lets_maplizer.R
letsR/tests/testthat/test-lets_addpoly.R
letsR/tests/testthat/test-lets_presab_grid.R
letsR/tests/testthat/test-removesp.R
letsR/tests/testthat/test-lets_classvar.R
letsR/tests/testthat/test-lets_subsetPAM.R
letsR/tests/testthat/test-lets_gridirizer.R
letsR/tests/testthat/test-lets_rangesize.R
letsR/tests/testthat/test-lets_iucn.R
letsR/tests/testthat/test-lets_midpoint.R
letsR/tests/testthat/test-lets_summarizer.R
letsR/tests/testthat/test-lets_pamcrop.R
letsR/tests/test-all.R
letsR/NAMESPACE
letsR/data
letsR/data/temp.rda
letsR/data/Phyllomedusa.rda
letsR/data/PAM.rda
letsR/data/IUCN.rda
letsR/R
letsR/R/Data_helps.R letsR/R/lets_iucn.R letsR/R/lets_presab_grid.R letsR/R/plot_PresenceAbsence.R letsR/R/letsR-package.R letsR/R/removecells.R letsR/R/lets_addpoly.R letsR/R/lets_rangesize.R letsR/R/lets_correl.R letsR/R/lets_transf.R letsR/R/lets_summaryze.R letsR/R/lets_distmat.R letsR/R/lets_maplizer.R letsR/R/lets_iucn_historic.R letsR/R/print_summary_PresenceAbsence.R letsR/R/lets_subsetPAM.R letsR/R/lets_classvar.R letsR/R/lets_gridirizer.R letsR/R/getcode.R letsR/R/removesp.R letsR/R/lets_field.R letsR/R/lets_presab_birds.R letsR/R/lets_shpfilter.R letsR/R/summary_PresenceAbsence.R letsR/R/lets_midpoint.R letsR/R/lets_presab_points.R letsR/R/PresenceAbsence-class.R letsR/R/getnames.R letsR/R/lets_iucncont.R letsR/R/lets_addvar.R letsR/R/lets_pamcrop.R letsR/R/unicas.R letsR/R/lets_iucn_habitats.R letsR/R/lets_overlap.R letsR/R/lets_presab.R letsR/R/print_PresenceAbsence.R
letsR/README.md
letsR/MD5
letsR/DESCRIPTION
letsR/man
letsR/man/lets.presab.Rd letsR/man/lets.maplizer.Rd letsR/man/lets.distmat.Rd letsR/man/lets.rangesize.Rd letsR/man/lets.iucncont.Rd letsR/man/lets.shFilter.Rd letsR/man/lets.classvar.Rd letsR/man/plot.PresenceAbsence.Rd letsR/man/lets.midpoint.Rd letsR/man/lets.subsetPAM.Rd letsR/man/IUCN.Rd letsR/man/print.PresenceAbsence.Rd letsR/man/lets.iucn.his.Rd letsR/man/lets.summarizer.Rd letsR/man/lets.correl.Rd letsR/man/lets.overlap.Rd letsR/man/lets.presab.grid.Rd letsR/man/lets.presab.points.Rd letsR/man/letsR-package.Rd letsR/man/lets.addvar.Rd letsR/man/lets.gridirizer.Rd letsR/man/Phyllomedusa.Rd letsR/man/lets.iucn.Rd letsR/man/lets.addpoly.Rd letsR/man/lets.pamcrop.Rd letsR/man/summary.PresenceAbsence.Rd letsR/man/lets.transf.Rd letsR/man/print.summary.PresenceAbsence.Rd letsR/man/lets.iucn.ha.Rd letsR/man/temp.Rd letsR/man/PAM.Rd letsR/man/PresenceAbsence.Rd letsR/man/lets.field.Rd letsR/man/lets.presab.birds.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

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