letsR: Tools for Data Handling and Analysis in Macroecology

R functions for handling, processing, and analyzing geographic data on species' distributions and environmental variables as well as species' description and conservation information.

AuthorBruno Vilela & Fabricio Villalobos
Date of publication2016-06-02 18:16:05
MaintainerBruno Vilela <brunovilelasilva@hotmail.com>
LicenseGPL-2
Version2.6
http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12401/abstract, https://github.com/macroecology/letsR

View on CRAN

Man pages

IUCN: IUCN avaliation for frogs of Phyllomedusa genus

lets.addpoly: Add polygon coverage to a PresenceAbscence object

lets.addvar: Add variables (in raster format) to a PresenceAbscence object

lets.classvar: Frequency distribution of a variable within a species' range

lets.correl: Compute correlogram based on the Moran's I index

lets.distmat: Compute a geographic distance matrix

lets.field: Create species' values based on the species co-occurrence...

lets.gridirizer: Fits a grid into a PresenceAbsence object

lets.iucn: Download species' information from the IUCN RedList online...

lets.iucncont: Transform IUCN RedList conservation status to continuous...

lets.iucn.ha: Download species' habitat information from the IUCN RedList...

lets.iucn.his: Download species' temporal trend in conservation status from...

lets.maplizer: Create a matrix summarizing species' attributes within cells...

lets.midpoint: Compute the midpoint of species' geographic ranges

lets.overlap: Compute pairwise species' geographic overlaps

lets.pamcrop: Crop a PresenceAbsence object based on an input shapefile

lets.presab: Create a presence-absence matrix of species' geographic...

lets.presab.birds: Create a presence-absence matrix of species' geographic...

lets.presab.grid: Create a presence-absence matrix of species' geographic...

lets.presab.points: Create a presence-absence matrix based on species' point...

lets.rangesize: Compute species' geographic range sizes

letsR-package: Tools for Data Handling and Analysis in Macroecology.

lets.shFilter: Filter species' shapefiles based on its presence, origin, and...

lets.subsetPAM: Subset a PresenceAbsence object based on species names

lets.summarizer: Summarize variable(s) values in a presence-absence matrix...

lets.transf: Transform values of a vector

PAM: PresenceAbsence object for frogs of Phyllomedusa genus

Phyllomedusa: Geographic distribution of Phyllomedusa genus

plot.PresenceAbsence: Plot an object of class PresenceAbsence

PresenceAbsence: PresenceAbsence Class

print.PresenceAbsence: Print for object of class PresenceAbsence

print.summary.PresenceAbsence: Print summary for object of class PresenceAbsence

summary.PresenceAbsence: Summary for object of class PresenceAbsence

temp: Avarege temperature raster for the world.

Functions

IUCN Man page
lets.addpoly Man page
lets.addvar Man page
lets.classvar Man page
lets.correl Man page
lets.distmat Man page
lets.field Man page
lets.gridirizer Man page
lets.iucn Man page
lets.iucncont Man page
lets.iucn.ha Man page
lets.iucn.his Man page
lets.maplizer Man page
lets.midpoint Man page
lets.overlap Man page
lets.pamcrop Man page
lets.presab Man page
lets.presab.birds Man page
lets.presab.grid Man page
lets.presab.points Man page
letsR Man page
lets.rangesize Man page
letsR-package Man page
lets.shFilter Man page
lets.subsetPAM Man page
lets.summarizer Man page
lets.transf Man page
PAM Man page
Phyllomedusa Man page
plot.PresenceAbsence Man page
PresenceAbsence Man page
PresenceAbsence-class Man page
print.PresenceAbsence Man page
print.summary.PresenceAbsence Man page
summary.PresenceAbsence Man page
temp Man page

Files

letsR
letsR/inst
letsR/inst/CITATION
letsR/inst/extdata
letsR/inst/extdata/Ramphastos
letsR/inst/extdata/Ramphastos/Ramphastos_cuvieri_22682159.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_ariel_22726233.shx
letsR/inst/extdata/Ramphastos/Ramphastos_toco_22682164.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_ambiguus_22727999.shp
letsR/inst/extdata/Ramphastos/Ramphastos_dicolorus_22682129.shx
letsR/inst/extdata/Ramphastos/Ramphastos_cuvieri_22682159.shp
letsR/inst/extdata/Ramphastos/Ramphastos_tucanus_22682153.shp
letsR/inst/extdata/Ramphastos/Ramphastos_toco_22682164.shx
letsR/inst/extdata/Ramphastos/Ramphastos_cuvieri_22682159.shx
letsR/inst/extdata/Ramphastos/Ramphastos_brevis_22682105.shx
letsR/inst/extdata/Ramphastos/Ramphastos_citrolaemus_62220237.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_sulfuratus_22682102.prj
letsR/inst/extdata/Ramphastos/Ramphastos_ariel_22726233.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_cuvieri_22682159.prj
letsR/inst/extdata/Ramphastos/Ramphastos_tucanus_22682153.prj
letsR/inst/extdata/Ramphastos/Ramphastos_culminatus_22726239.prj
letsR/inst/extdata/Ramphastos/Ramphastos_tucanus_22682153.shx
letsR/inst/extdata/Ramphastos/Ramphastos_ambiguus_22727999.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_tucanus_22682153.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_citrolaemus_62220237.prj
letsR/inst/extdata/Ramphastos/Ramphastos_citrolaemus_62220237.shx
letsR/inst/extdata/Ramphastos/Ramphastos_culminatus_22726239.shp
letsR/inst/extdata/Ramphastos/Ramphastos_culminatus_22726239.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_vitellinus_22726222.shp
letsR/inst/extdata/Ramphastos/Ramphastos_ariel_22726233.prj
letsR/inst/extdata/Ramphastos/Ramphastos_dicolorus_22682129.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_dicolorus_22682129.shp
letsR/inst/extdata/Ramphastos/Ramphastos_ambiguus_22727999.prj
letsR/inst/extdata/Ramphastos/Ramphastos_brevis_22682105.prj
letsR/inst/extdata/Ramphastos/Ramphastos_toco_22682164.shp
letsR/inst/extdata/Ramphastos/Ramphastos_brevis_22682105.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_dicolorus_22682129.prj
letsR/inst/extdata/Ramphastos/Ramphastos_vitellinus_22726222.prj
letsR/inst/extdata/Ramphastos/Ramphastos_vitellinus_22726222.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_sulfuratus_22682102.shx
letsR/inst/extdata/Ramphastos/Ramphastos_ariel_22726233.shp
letsR/inst/extdata/Ramphastos/Ramphastos_citrolaemus_62220237.shp
letsR/inst/extdata/Ramphastos/Ramphastos_brevis_22682105.shp
letsR/inst/extdata/Ramphastos/Ramphastos_toco_22682164.prj
letsR/inst/extdata/Ramphastos/Ramphastos_sulfuratus_22682102.shp
letsR/inst/extdata/Ramphastos/Ramphastos_vitellinus_22726222.shx
letsR/inst/extdata/Ramphastos/Ramphastos_ambiguus_22727999.shx
letsR/inst/extdata/Ramphastos/Ramphastos_sulfuratus_22682102.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_culminatus_22726239.shx
letsR/tests
letsR/tests/testthat
letsR/tests/testthat/test-lets_iucn_ha.R
letsR/tests/testthat/test-lets_iucn_his.R
letsR/tests/testthat/test-lets_distmat.R
letsR/tests/testthat/test-lets_presab_points.R
letsR/tests/testthat/test-lets_addvar.R
letsR/tests/testthat/test-removecells.R
letsR/tests/testthat/test-lets_iuccont.R
letsR/tests/testthat/test-lets_transf.R
letsR/tests/testthat/test-lets_presab_birds.R
letsR/tests/testthat/test-lets_presab.R
letsR/tests/testthat/test-TimLucas.r
letsR/tests/testthat/test-unicas.R
letsR/tests/testthat/test-lets_overlap.R
letsR/tests/testthat/test-lets_field.R
letsR/tests/testthat/test-printplotsummary.R
letsR/tests/testthat/test-lets_correl.R
letsR/tests/testthat/test-lets_maplizer.R
letsR/tests/testthat/test-lets_addpoly.R
letsR/tests/testthat/test-lets_presab_grid.R
letsR/tests/testthat/test-removesp.R
letsR/tests/testthat/test-lets_classvar.R
letsR/tests/testthat/test-lets_subsetPAM.R
letsR/tests/testthat/test-lets_gridirizer.R
letsR/tests/testthat/test-lets_rangesize.R
letsR/tests/testthat/test-lets_iucn.R
letsR/tests/testthat/test-lets_midpoint.R
letsR/tests/testthat/test-lets_summarizer.R
letsR/tests/testthat/test-lets_pamcrop.R
letsR/tests/test-all.R
letsR/NAMESPACE
letsR/data
letsR/data/temp.rda
letsR/data/Phyllomedusa.rda
letsR/data/PAM.rda
letsR/data/IUCN.rda
letsR/R
letsR/R/Data_helps.R letsR/R/lets_iucn.R letsR/R/lets_presab_grid.R letsR/R/plot_PresenceAbsence.R letsR/R/letsR-package.R letsR/R/removecells.R letsR/R/lets_addpoly.R letsR/R/lets_rangesize.R letsR/R/lets_correl.R letsR/R/lets_transf.R letsR/R/lets_summaryze.R letsR/R/lets_distmat.R letsR/R/lets_maplizer.R letsR/R/lets_iucn_historic.R letsR/R/print_summary_PresenceAbsence.R letsR/R/lets_subsetPAM.R letsR/R/lets_classvar.R letsR/R/lets_gridirizer.R letsR/R/getcode.R letsR/R/removesp.R letsR/R/lets_field.R letsR/R/lets_presab_birds.R letsR/R/lets_shpfilter.R letsR/R/summary_PresenceAbsence.R letsR/R/lets_midpoint.R letsR/R/lets_presab_points.R letsR/R/PresenceAbsence-class.R letsR/R/getnames.R letsR/R/lets_iucncont.R letsR/R/lets_addvar.R letsR/R/lets_pamcrop.R letsR/R/unicas.R letsR/R/lets_iucn_habitats.R letsR/R/lets_overlap.R letsR/R/lets_presab.R letsR/R/print_PresenceAbsence.R
letsR/README.md
letsR/MD5
letsR/DESCRIPTION
letsR/man
letsR/man/lets.presab.Rd letsR/man/lets.maplizer.Rd letsR/man/lets.distmat.Rd letsR/man/lets.rangesize.Rd letsR/man/lets.iucncont.Rd letsR/man/lets.shFilter.Rd letsR/man/lets.classvar.Rd letsR/man/plot.PresenceAbsence.Rd letsR/man/lets.midpoint.Rd letsR/man/lets.subsetPAM.Rd letsR/man/IUCN.Rd letsR/man/print.PresenceAbsence.Rd letsR/man/lets.iucn.his.Rd letsR/man/lets.summarizer.Rd letsR/man/lets.correl.Rd letsR/man/lets.overlap.Rd letsR/man/lets.presab.grid.Rd letsR/man/lets.presab.points.Rd letsR/man/letsR-package.Rd letsR/man/lets.addvar.Rd letsR/man/lets.gridirizer.Rd letsR/man/Phyllomedusa.Rd letsR/man/lets.iucn.Rd letsR/man/lets.addpoly.Rd letsR/man/lets.pamcrop.Rd letsR/man/summary.PresenceAbsence.Rd letsR/man/lets.transf.Rd letsR/man/print.summary.PresenceAbsence.Rd letsR/man/lets.iucn.ha.Rd letsR/man/temp.Rd letsR/man/PAM.Rd letsR/man/PresenceAbsence.Rd letsR/man/lets.field.Rd letsR/man/lets.presab.birds.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.