letsR: Tools for Data Handling and Analysis in Macroecology

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R functions for handling, processing, and analyzing geographic data on species' distributions and environmental variables as well as species' description and conservation information.

Author
Bruno Vilela & Fabricio Villalobos
Date of publication
2016-06-02 18:16:05
Maintainer
Bruno Vilela <brunovilelasilva@hotmail.com>
License
GPL-2
Version
2.6
URLs

View on CRAN

Man pages

IUCN
IUCN avaliation for frogs of Phyllomedusa genus
lets.addpoly
Add polygon coverage to a PresenceAbscence object
lets.addvar
Add variables (in raster format) to a PresenceAbscence object
lets.classvar
Frequency distribution of a variable within a species' range
lets.correl
Compute correlogram based on the Moran's I index
lets.distmat
Compute a geographic distance matrix
lets.field
Create species' values based on the species co-occurrence...
lets.gridirizer
Fits a grid into a PresenceAbsence object
lets.iucn
Download species' information from the IUCN RedList online...
lets.iucncont
Transform IUCN RedList conservation status to continuous...
lets.iucn.ha
Download species' habitat information from the IUCN RedList...
lets.iucn.his
Download species' temporal trend in conservation status from...
lets.maplizer
Create a matrix summarizing species' attributes within cells...
lets.midpoint
Compute the midpoint of species' geographic ranges
lets.overlap
Compute pairwise species' geographic overlaps
lets.pamcrop
Crop a PresenceAbsence object based on an input shapefile
lets.presab
Create a presence-absence matrix of species' geographic...
lets.presab.birds
Create a presence-absence matrix of species' geographic...
lets.presab.grid
Create a presence-absence matrix of species' geographic...
lets.presab.points
Create a presence-absence matrix based on species' point...
lets.rangesize
Compute species' geographic range sizes
letsR-package
Tools for Data Handling and Analysis in Macroecology.
lets.shFilter
Filter species' shapefiles based on its presence, origin, and...
lets.subsetPAM
Subset a PresenceAbsence object based on species names
lets.summarizer
Summarize variable(s) values in a presence-absence matrix...
lets.transf
Transform values of a vector
PAM
PresenceAbsence object for frogs of Phyllomedusa genus
Phyllomedusa
Geographic distribution of Phyllomedusa genus
plot.PresenceAbsence
Plot an object of class PresenceAbsence
PresenceAbsence
PresenceAbsence Class
print.PresenceAbsence
Print for object of class PresenceAbsence
print.summary.PresenceAbsence
Print summary for object of class PresenceAbsence
summary.PresenceAbsence
Summary for object of class PresenceAbsence
temp
Avarege temperature raster for the world.

Files in this package

letsR
letsR/inst
letsR/inst/CITATION
letsR/inst/extdata
letsR/inst/extdata/Ramphastos
letsR/inst/extdata/Ramphastos/Ramphastos_cuvieri_22682159.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_ariel_22726233.shx
letsR/inst/extdata/Ramphastos/Ramphastos_toco_22682164.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_ambiguus_22727999.shp
letsR/inst/extdata/Ramphastos/Ramphastos_dicolorus_22682129.shx
letsR/inst/extdata/Ramphastos/Ramphastos_cuvieri_22682159.shp
letsR/inst/extdata/Ramphastos/Ramphastos_tucanus_22682153.shp
letsR/inst/extdata/Ramphastos/Ramphastos_toco_22682164.shx
letsR/inst/extdata/Ramphastos/Ramphastos_cuvieri_22682159.shx
letsR/inst/extdata/Ramphastos/Ramphastos_brevis_22682105.shx
letsR/inst/extdata/Ramphastos/Ramphastos_citrolaemus_62220237.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_sulfuratus_22682102.prj
letsR/inst/extdata/Ramphastos/Ramphastos_ariel_22726233.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_cuvieri_22682159.prj
letsR/inst/extdata/Ramphastos/Ramphastos_tucanus_22682153.prj
letsR/inst/extdata/Ramphastos/Ramphastos_culminatus_22726239.prj
letsR/inst/extdata/Ramphastos/Ramphastos_tucanus_22682153.shx
letsR/inst/extdata/Ramphastos/Ramphastos_ambiguus_22727999.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_tucanus_22682153.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_citrolaemus_62220237.prj
letsR/inst/extdata/Ramphastos/Ramphastos_citrolaemus_62220237.shx
letsR/inst/extdata/Ramphastos/Ramphastos_culminatus_22726239.shp
letsR/inst/extdata/Ramphastos/Ramphastos_culminatus_22726239.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_vitellinus_22726222.shp
letsR/inst/extdata/Ramphastos/Ramphastos_ariel_22726233.prj
letsR/inst/extdata/Ramphastos/Ramphastos_dicolorus_22682129.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_dicolorus_22682129.shp
letsR/inst/extdata/Ramphastos/Ramphastos_ambiguus_22727999.prj
letsR/inst/extdata/Ramphastos/Ramphastos_brevis_22682105.prj
letsR/inst/extdata/Ramphastos/Ramphastos_toco_22682164.shp
letsR/inst/extdata/Ramphastos/Ramphastos_brevis_22682105.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_dicolorus_22682129.prj
letsR/inst/extdata/Ramphastos/Ramphastos_vitellinus_22726222.prj
letsR/inst/extdata/Ramphastos/Ramphastos_vitellinus_22726222.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_sulfuratus_22682102.shx
letsR/inst/extdata/Ramphastos/Ramphastos_ariel_22726233.shp
letsR/inst/extdata/Ramphastos/Ramphastos_citrolaemus_62220237.shp
letsR/inst/extdata/Ramphastos/Ramphastos_brevis_22682105.shp
letsR/inst/extdata/Ramphastos/Ramphastos_toco_22682164.prj
letsR/inst/extdata/Ramphastos/Ramphastos_sulfuratus_22682102.shp
letsR/inst/extdata/Ramphastos/Ramphastos_vitellinus_22726222.shx
letsR/inst/extdata/Ramphastos/Ramphastos_ambiguus_22727999.shx
letsR/inst/extdata/Ramphastos/Ramphastos_sulfuratus_22682102.dbf
letsR/inst/extdata/Ramphastos/Ramphastos_culminatus_22726239.shx
letsR/tests
letsR/tests/testthat
letsR/tests/testthat/test-lets_iucn_ha.R
letsR/tests/testthat/test-lets_iucn_his.R
letsR/tests/testthat/test-lets_distmat.R
letsR/tests/testthat/test-lets_presab_points.R
letsR/tests/testthat/test-lets_addvar.R
letsR/tests/testthat/test-removecells.R
letsR/tests/testthat/test-lets_iuccont.R
letsR/tests/testthat/test-lets_transf.R
letsR/tests/testthat/test-lets_presab_birds.R
letsR/tests/testthat/test-lets_presab.R
letsR/tests/testthat/test-TimLucas.r
letsR/tests/testthat/test-unicas.R
letsR/tests/testthat/test-lets_overlap.R
letsR/tests/testthat/test-lets_field.R
letsR/tests/testthat/test-printplotsummary.R
letsR/tests/testthat/test-lets_correl.R
letsR/tests/testthat/test-lets_maplizer.R
letsR/tests/testthat/test-lets_addpoly.R
letsR/tests/testthat/test-lets_presab_grid.R
letsR/tests/testthat/test-removesp.R
letsR/tests/testthat/test-lets_classvar.R
letsR/tests/testthat/test-lets_subsetPAM.R
letsR/tests/testthat/test-lets_gridirizer.R
letsR/tests/testthat/test-lets_rangesize.R
letsR/tests/testthat/test-lets_iucn.R
letsR/tests/testthat/test-lets_midpoint.R
letsR/tests/testthat/test-lets_summarizer.R
letsR/tests/testthat/test-lets_pamcrop.R
letsR/tests/test-all.R
letsR/NAMESPACE
letsR/data
letsR/data/temp.rda
letsR/data/Phyllomedusa.rda
letsR/data/PAM.rda
letsR/data/IUCN.rda
letsR/R
letsR/R/Data_helps.R
letsR/R/lets_iucn.R
letsR/R/lets_presab_grid.R
letsR/R/plot_PresenceAbsence.R
letsR/R/letsR-package.R
letsR/R/removecells.R
letsR/R/lets_addpoly.R
letsR/R/lets_rangesize.R
letsR/R/lets_correl.R
letsR/R/lets_transf.R
letsR/R/lets_summaryze.R
letsR/R/lets_distmat.R
letsR/R/lets_maplizer.R
letsR/R/lets_iucn_historic.R
letsR/R/print_summary_PresenceAbsence.R
letsR/R/lets_subsetPAM.R
letsR/R/lets_classvar.R
letsR/R/lets_gridirizer.R
letsR/R/getcode.R
letsR/R/removesp.R
letsR/R/lets_field.R
letsR/R/lets_presab_birds.R
letsR/R/lets_shpfilter.R
letsR/R/summary_PresenceAbsence.R
letsR/R/lets_midpoint.R
letsR/R/lets_presab_points.R
letsR/R/PresenceAbsence-class.R
letsR/R/getnames.R
letsR/R/lets_iucncont.R
letsR/R/lets_addvar.R
letsR/R/lets_pamcrop.R
letsR/R/unicas.R
letsR/R/lets_iucn_habitats.R
letsR/R/lets_overlap.R
letsR/R/lets_presab.R
letsR/R/print_PresenceAbsence.R
letsR/README.md
letsR/MD5
letsR/DESCRIPTION
letsR/man
letsR/man/lets.presab.Rd
letsR/man/lets.maplizer.Rd
letsR/man/lets.distmat.Rd
letsR/man/lets.rangesize.Rd
letsR/man/lets.iucncont.Rd
letsR/man/lets.shFilter.Rd
letsR/man/lets.classvar.Rd
letsR/man/plot.PresenceAbsence.Rd
letsR/man/lets.midpoint.Rd
letsR/man/lets.subsetPAM.Rd
letsR/man/IUCN.Rd
letsR/man/print.PresenceAbsence.Rd
letsR/man/lets.iucn.his.Rd
letsR/man/lets.summarizer.Rd
letsR/man/lets.correl.Rd
letsR/man/lets.overlap.Rd
letsR/man/lets.presab.grid.Rd
letsR/man/lets.presab.points.Rd
letsR/man/letsR-package.Rd
letsR/man/lets.addvar.Rd
letsR/man/lets.gridirizer.Rd
letsR/man/Phyllomedusa.Rd
letsR/man/lets.iucn.Rd
letsR/man/lets.addpoly.Rd
letsR/man/lets.pamcrop.Rd
letsR/man/summary.PresenceAbsence.Rd
letsR/man/lets.transf.Rd
letsR/man/print.summary.PresenceAbsence.Rd
letsR/man/lets.iucn.ha.Rd
letsR/man/temp.Rd
letsR/man/PAM.Rd
letsR/man/PresenceAbsence.Rd
letsR/man/lets.field.Rd
letsR/man/lets.presab.birds.Rd