letsR: Tools for Data Handling and Analysis in Macroecology
Version 2.6

R functions for handling, processing, and analyzing geographic data on species' distributions and environmental variables as well as species' description and conservation information.

Browse man pages Browse package API and functions Browse package files

AuthorBruno Vilela & Fabricio Villalobos
Date of publication2016-06-02 18:16:05
MaintainerBruno Vilela <brunovilelasilva@hotmail.com>
LicenseGPL-2
Version2.6
URL http://onlinelibrary.wiley.com/doi/10.1111/2041-210X.12401/abstract https://github.com/macroecology/letsR
Package repositoryView on CRAN
InstallationInstall the latest version of this package by entering the following in R:
install.packages("letsR")

Man pages

IUCN: IUCN avaliation for frogs of Phyllomedusa genus
lets.addpoly: Add polygon coverage to a PresenceAbscence object
lets.addvar: Add variables (in raster format) to a PresenceAbscence object
lets.classvar: Frequency distribution of a variable within a species' range
lets.correl: Compute correlogram based on the Moran's I index
lets.distmat: Compute a geographic distance matrix
lets.field: Create species' values based on the species co-occurrence...
lets.gridirizer: Fits a grid into a PresenceAbsence object
lets.iucn: Download species' information from the IUCN RedList online...
lets.iucncont: Transform IUCN RedList conservation status to continuous...
lets.iucn.ha: Download species' habitat information from the IUCN RedList...
lets.iucn.his: Download species' temporal trend in conservation status from...
lets.maplizer: Create a matrix summarizing species' attributes within cells...
lets.midpoint: Compute the midpoint of species' geographic ranges
lets.overlap: Compute pairwise species' geographic overlaps
lets.pamcrop: Crop a PresenceAbsence object based on an input shapefile
lets.presab: Create a presence-absence matrix of species' geographic...
lets.presab.birds: Create a presence-absence matrix of species' geographic...
lets.presab.grid: Create a presence-absence matrix of species' geographic...
lets.presab.points: Create a presence-absence matrix based on species' point...
lets.rangesize: Compute species' geographic range sizes
letsR-package: Tools for Data Handling and Analysis in Macroecology.
lets.shFilter: Filter species' shapefiles based on its presence, origin, and...
lets.subsetPAM: Subset a PresenceAbsence object based on species names
lets.summarizer: Summarize variable(s) values in a presence-absence matrix...
lets.transf: Transform values of a vector
PAM: PresenceAbsence object for frogs of Phyllomedusa genus
Phyllomedusa: Geographic distribution of Phyllomedusa genus
plot.PresenceAbsence: Plot an object of class PresenceAbsence
PresenceAbsence: PresenceAbsence Class
print.PresenceAbsence: Print for object of class PresenceAbsence
print.summary.PresenceAbsence: Print summary for object of class PresenceAbsence
summary.PresenceAbsence: Summary for object of class PresenceAbsence
temp: Avarege temperature raster for the world.

Functions

Habitat Source code
Hist Source code
IUCN Man page
InsiLoop Source code
PAM Man page
Phyllomedusa Man page
PresenceAbsence Man page
PresenceAbsence-class Man page
br.correlogram Source code
br.moran Source code
extractpos Source code
extractpos.birds Source code
extractpos.points Source code
getcode Source code
getnames Source code
lets.addpoly Man page Source code
lets.addvar Man page Source code
lets.classvar Man page Source code
lets.correl Man page Source code
lets.distmat Man page Source code
lets.field Man page Source code
lets.gridirizer Man page Source code
lets.iucn Man page Source code
lets.iucn.ha Man page Source code
lets.iucn.his Man page Source code
lets.iucncont Man page Source code
lets.maplizer Man page Source code
lets.midpoint Man page Source code
lets.overlap Man page Source code
lets.pamcrop Man page Source code
lets.presab Man page Source code
lets.presab.birds Man page Source code
lets.presab.grid Man page Source code
lets.presab.points Man page Source code
lets.rangesize Man page Source code
lets.shFilter Man page Source code
lets.subsetPAM Man page Source code
lets.summarizer Man page Source code
lets.transf Man page Source code
letsR Man page
letsR-package Man page
oopIUCN Source code
plot.PresenceAbsence Man page Source code
plotcorrel Source code
print.PresenceAbsence Man page Source code
print.summary.PresenceAbsence Man page Source code
removeCells Source code
removeSp Source code
summary.PresenceAbsence Man page Source code
temp Man page
unicas Source code

Files

inst
inst/CITATION
inst/extdata
inst/extdata/Ramphastos
inst/extdata/Ramphastos/Ramphastos_cuvieri_22682159.dbf
inst/extdata/Ramphastos/Ramphastos_ariel_22726233.shx
inst/extdata/Ramphastos/Ramphastos_toco_22682164.dbf
inst/extdata/Ramphastos/Ramphastos_ambiguus_22727999.shp
inst/extdata/Ramphastos/Ramphastos_dicolorus_22682129.shx
inst/extdata/Ramphastos/Ramphastos_cuvieri_22682159.shp
inst/extdata/Ramphastos/Ramphastos_tucanus_22682153.shp
inst/extdata/Ramphastos/Ramphastos_toco_22682164.shx
inst/extdata/Ramphastos/Ramphastos_cuvieri_22682159.shx
inst/extdata/Ramphastos/Ramphastos_brevis_22682105.shx
inst/extdata/Ramphastos/Ramphastos_citrolaemus_62220237.dbf
inst/extdata/Ramphastos/Ramphastos_sulfuratus_22682102.prj
inst/extdata/Ramphastos/Ramphastos_ariel_22726233.dbf
inst/extdata/Ramphastos/Ramphastos_cuvieri_22682159.prj
inst/extdata/Ramphastos/Ramphastos_tucanus_22682153.prj
inst/extdata/Ramphastos/Ramphastos_culminatus_22726239.prj
inst/extdata/Ramphastos/Ramphastos_tucanus_22682153.shx
inst/extdata/Ramphastos/Ramphastos_ambiguus_22727999.dbf
inst/extdata/Ramphastos/Ramphastos_tucanus_22682153.dbf
inst/extdata/Ramphastos/Ramphastos_citrolaemus_62220237.prj
inst/extdata/Ramphastos/Ramphastos_citrolaemus_62220237.shx
inst/extdata/Ramphastos/Ramphastos_culminatus_22726239.shp
inst/extdata/Ramphastos/Ramphastos_culminatus_22726239.dbf
inst/extdata/Ramphastos/Ramphastos_vitellinus_22726222.shp
inst/extdata/Ramphastos/Ramphastos_ariel_22726233.prj
inst/extdata/Ramphastos/Ramphastos_dicolorus_22682129.dbf
inst/extdata/Ramphastos/Ramphastos_dicolorus_22682129.shp
inst/extdata/Ramphastos/Ramphastos_ambiguus_22727999.prj
inst/extdata/Ramphastos/Ramphastos_brevis_22682105.prj
inst/extdata/Ramphastos/Ramphastos_toco_22682164.shp
inst/extdata/Ramphastos/Ramphastos_brevis_22682105.dbf
inst/extdata/Ramphastos/Ramphastos_dicolorus_22682129.prj
inst/extdata/Ramphastos/Ramphastos_vitellinus_22726222.prj
inst/extdata/Ramphastos/Ramphastos_vitellinus_22726222.dbf
inst/extdata/Ramphastos/Ramphastos_sulfuratus_22682102.shx
inst/extdata/Ramphastos/Ramphastos_ariel_22726233.shp
inst/extdata/Ramphastos/Ramphastos_citrolaemus_62220237.shp
inst/extdata/Ramphastos/Ramphastos_brevis_22682105.shp
inst/extdata/Ramphastos/Ramphastos_toco_22682164.prj
inst/extdata/Ramphastos/Ramphastos_sulfuratus_22682102.shp
inst/extdata/Ramphastos/Ramphastos_vitellinus_22726222.shx
inst/extdata/Ramphastos/Ramphastos_ambiguus_22727999.shx
inst/extdata/Ramphastos/Ramphastos_sulfuratus_22682102.dbf
inst/extdata/Ramphastos/Ramphastos_culminatus_22726239.shx
tests
tests/testthat
tests/testthat/test-lets_iucn_ha.R
tests/testthat/test-lets_iucn_his.R
tests/testthat/test-lets_distmat.R
tests/testthat/test-lets_presab_points.R
tests/testthat/test-lets_addvar.R
tests/testthat/test-removecells.R
tests/testthat/test-lets_iuccont.R
tests/testthat/test-lets_transf.R
tests/testthat/test-lets_presab_birds.R
tests/testthat/test-lets_presab.R
tests/testthat/test-TimLucas.r
tests/testthat/test-unicas.R
tests/testthat/test-lets_overlap.R
tests/testthat/test-lets_field.R
tests/testthat/test-printplotsummary.R
tests/testthat/test-lets_correl.R
tests/testthat/test-lets_maplizer.R
tests/testthat/test-lets_addpoly.R
tests/testthat/test-lets_presab_grid.R
tests/testthat/test-removesp.R
tests/testthat/test-lets_classvar.R
tests/testthat/test-lets_subsetPAM.R
tests/testthat/test-lets_gridirizer.R
tests/testthat/test-lets_rangesize.R
tests/testthat/test-lets_iucn.R
tests/testthat/test-lets_midpoint.R
tests/testthat/test-lets_summarizer.R
tests/testthat/test-lets_pamcrop.R
tests/test-all.R
NAMESPACE
data
data/temp.rda
data/Phyllomedusa.rda
data/PAM.rda
data/IUCN.rda
R
R/Data_helps.R
R/lets_iucn.R
R/lets_presab_grid.R
R/plot_PresenceAbsence.R
R/letsR-package.R
R/removecells.R
R/lets_addpoly.R
R/lets_rangesize.R
R/lets_correl.R
R/lets_transf.R
R/lets_summaryze.R
R/lets_distmat.R
R/lets_maplizer.R
R/lets_iucn_historic.R
R/print_summary_PresenceAbsence.R
R/lets_subsetPAM.R
R/lets_classvar.R
R/lets_gridirizer.R
R/getcode.R
R/removesp.R
R/lets_field.R
R/lets_presab_birds.R
R/lets_shpfilter.R
R/summary_PresenceAbsence.R
R/lets_midpoint.R
R/lets_presab_points.R
R/PresenceAbsence-class.R
R/getnames.R
R/lets_iucncont.R
R/lets_addvar.R
R/lets_pamcrop.R
R/unicas.R
R/lets_iucn_habitats.R
R/lets_overlap.R
R/lets_presab.R
R/print_PresenceAbsence.R
README.md
MD5
DESCRIPTION
man
man/lets.presab.Rd
man/lets.maplizer.Rd
man/lets.distmat.Rd
man/lets.rangesize.Rd
man/lets.iucncont.Rd
man/lets.shFilter.Rd
man/lets.classvar.Rd
man/plot.PresenceAbsence.Rd
man/lets.midpoint.Rd
man/lets.subsetPAM.Rd
man/IUCN.Rd
man/print.PresenceAbsence.Rd
man/lets.iucn.his.Rd
man/lets.summarizer.Rd
man/lets.correl.Rd
man/lets.overlap.Rd
man/lets.presab.grid.Rd
man/lets.presab.points.Rd
man/letsR-package.Rd
man/lets.addvar.Rd
man/lets.gridirizer.Rd
man/Phyllomedusa.Rd
man/lets.iucn.Rd
man/lets.addpoly.Rd
man/lets.pamcrop.Rd
man/summary.PresenceAbsence.Rd
man/lets.transf.Rd
man/print.summary.PresenceAbsence.Rd
man/lets.iucn.ha.Rd
man/temp.Rd
man/PAM.Rd
man/PresenceAbsence.Rd
man/lets.field.Rd
man/lets.presab.birds.Rd
letsR documentation built on May 29, 2017, 12:12 p.m.