Tools for detecting and correcting sample mix-ups between two sets of measurements, such as between gene expression data on two tissues.
|Author||Karl W Broman <firstname.lastname@example.org>|
|Date of publication||2015-07-29 00:11:39|
|Maintainer||Karl W Broman <email@example.com>|
calc.locallod: Calculate LOD score at physical position of each gene
combinedist: Combine distance matrices into a single such
corbetw2mat: Calculate correlations between columns of two matrices
distee: Calculate distance between two gene expression data sets
disteg: Calculate distance between two gene expression data sets
expr-data: Example gene expression data
f2cross: Example experimental cross data
findCommonID: Find individuals in common between a cross and a phenotype...
find.gene.pseudomarker: Find nearest peudomarker to each gene
fscale: Standardize the columns of a matrix
genepos: Genomic positions of genes in simulated expression data
lineupversion: Installed version of R/lineup
omitdiag: Replace the diagonal in a distance matrix with missing values
plot2dist: Plot two sets of inter-individual distances against one...
plotEGclass: Plot classifier of eQTL genotype from expression data
plot.lineupdist: Plot summary of inter-individual distances
pmap: Physical map of markers
pulldiag: Pull out the diagonal from a distance matrix
subset.lineupdist: Subsetting distance matrix
summary.lineupdist: Summarize inter-individual distances