lineup: Lining Up Two Sets of Measurements

Tools for detecting and correcting sample mix-ups between two sets of measurements, such as between gene expression data on two tissues.

AuthorKarl W Broman <kbroman@biostat.wisc.edu>
Date of publication2015-07-29 00:11:39
MaintainerKarl W Broman <kbroman@biostat.wisc.edu>
LicenseGPL-3
Version0.37-6
https://github.com/kbroman/lineup

View on CRAN

Functions

calc.locallod Man page
combinedist Man page
corbetw2mat Man page
distee Man page
disteg Man page
expr1 Man page
expr2 Man page
expr-data Man page
f2cross Man page
findCommonID Man page
find.gene.pseudomarker Man page
fscale Man page
genepos Man page
[.lineupdist Man page
lineupversion Man page
omitdiag Man page
plot2dist Man page
plotEGclass Man page
plot.lineupdist Man page
pmap Man page
pulldiag Man page
subset.lineupdist Man page
summary.lineupdist Man page

Files

lineup
lineup/inst
lineup/inst/TODO.txt
lineup/inst/LICENSE.txt
lineup/inst/doc
lineup/inst/doc/lineup.R
lineup/inst/doc/lineup.Rmd
lineup/inst/doc/lineup.html
lineup/tests
lineup/tests/testthat.R
lineup/tests/testthat
lineup/tests/testthat/test-combinedist.R
lineup/tests/testthat/test-corbetw2mat.R
lineup/src
lineup/src/util.c
lineup/src/rmsd.c
lineup/src/propmismatch.c
lineup/src/fscale.h
lineup/src/propmismatch.h
lineup/src/util.h
lineup/src/rmsd.h
lineup/src/corbetw2mat.c
lineup/src/corbetw2mat.h
lineup/src/fscale.c
lineup/NAMESPACE
lineup/NEWS
lineup/data
lineup/data/pmap.rda
lineup/data/expr1.rda
lineup/data/genepos.rda
lineup/data/datalist
lineup/data/f2cross.rda
lineup/data/expr2.rda
lineup/R
lineup/R/disteg.R lineup/R/f2cross-data.R lineup/R/genepos-data.R lineup/R/omitdiag.R lineup/R/combinedist.R lineup/R/corbetw2mat.R lineup/R/plot.lineupdist.R lineup/R/pmap-data.R lineup/R/subset.lineupdist.R lineup/R/find.gene.pseudomarker.R lineup/R/findCommonID.R lineup/R/plotEGclass.R lineup/R/util.R lineup/R/expr1-data.R lineup/R/plot2dist.R lineup/R/fscale.R lineup/R/distee.R lineup/R/summary.lineupdist.R lineup/R/pulldiag.R lineup/R/calc.locallod.R
lineup/vignettes
lineup/vignettes/lineup.Rmd
lineup/MD5
lineup/build
lineup/build/vignette.rds
lineup/DESCRIPTION
lineup/ChangeLog
lineup/man
lineup/man/calc.locallod.Rd lineup/man/lineupversion.Rd lineup/man/plot2dist.Rd lineup/man/plot.lineupdist.Rd lineup/man/pmap.Rd lineup/man/omitdiag.Rd lineup/man/expr-data.Rd lineup/man/corbetw2mat.Rd lineup/man/find.gene.pseudomarker.Rd lineup/man/summary.lineupdist.Rd lineup/man/subset.lineupdist.Rd lineup/man/distee.Rd lineup/man/f2cross.Rd lineup/man/pulldiag.Rd lineup/man/plotEGclass.Rd lineup/man/combinedist.Rd lineup/man/findCommonID.Rd lineup/man/disteg.Rd lineup/man/fscale.Rd lineup/man/genepos.Rd

Questions? Problems? Suggestions? or email at ian@mutexlabs.com.

Please suggest features or report bugs with the GitHub issue tracker.

All documentation is copyright its authors; we didn't write any of that.