Description Usage Arguments Value See Also Examples
Return the distance matrix with all self-self distances replaced with NAs (and so just containing the self-self distances).
1 | get_nonself(d)
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d |
A distance matrix |
The input distance matrix with all self-self distances replaced with NAs.
get_self()
, get_best()
, get_2ndbest()
1 2 3 4 5 6 7 8 9 | # align rows in the provided dataset, lineup2ex
aligned <- align_matrix_rows(lineup2ex$gastroc, lineup2ex$islet)
# find correlated columns
selected_genes <- (corr_betw_matrices(aligned[[1]], aligned[[2]], "paired") > 0.75)
# calculate correlation between rows
similarity <- corr_betw_matrices(t(lineup2ex$gastroc[,selected_genes]),
t(lineup2ex$islet[,selected_genes]), "all")
# pull out the non-self similarities
nonself <- get_nonself(similarity)
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