Description Usage Arguments Details Value See Also Examples
View source: R/hist_self_nonself.R
Plot histograms of self-self and self-nonself distances
1 | hist_self_nonself(d, breaks = NULL, rug = TRUE, xlabel = "distance")
|
d |
A distance matrix |
breaks |
Histogram breaks (default is to use 100 intervals) |
rug |
If TRUE, use |
xlabel |
Label on x-axes (e.g., "similarity" vs "distance") |
We use the mfrow
arg for graphics::par()
to make a
two-panel figure.
None.
1 2 3 4 5 6 7 8 9 | # align rows in the provided dataset, lineup2ex
aligned <- align_matrix_rows(lineup2ex$gastroc, lineup2ex$islet)
# find correlated columns
selected_genes <- (corr_betw_matrices(aligned[[1]], aligned[[2]], "paired") > 0.75)
# calculate correlation between rows
similarity <- corr_betw_matrices(t(lineup2ex$gastroc[,selected_genes]),
t(lineup2ex$islet[,selected_genes]), "all")
# histograms of the self and non-self distances
hist_self_nonself(similarity)
|
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